| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G32380.1 |
| Family | GH28 |
| Protein Properties | Length: 355 Molecular Weight: 38376.3 Isoelectric Point: 8.0211 |
| Chromosome | Chromosome/Scaffold: 4 Start: 15633641 End: 15635467 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 5 | 283 | 0 |
| WGRNKLDCWLCFEKVTGLVLTGSGVLNTHGESWWSSVALQSRPVAVRFFGCQNILYNGLTQINSPRNHITILDSNNATLSNLHLIAPASSPNTDGIDISH SQNINIMSSTIKTGDDCVAIKRNSYNINVTYVTCGPGHGISIGSLGEGGASEVVQNVNVRHCTFTGTQNGARIKTWPGGQGFVKNILYEDITLINANFPI IIDQQYRDNAGQYKQSAGATAVKVSDVTFRSFTGTCAAPIAIKLDCDPNTGCDNIVMEQINIASSSPKTPLTSYCKFAH | |||
| Full Sequence |
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| Protein Sequence Length: 355 Download |
| MANDWGRNKL DCWLCFEKVT GLVLTGSGVL NTHGESWWSS VALQSRPVAV RFFGCQNILY 60 NGLTQINSPR NHITILDSNN ATLSNLHLIA PASSPNTDGI DISHSQNINI MSSTIKTGDD 120 CVAIKRNSYN INVTYVTCGP GHGISIGSLG EGGASEVVQN VNVRHCTFTG TQNGARIKTW 180 PGGQGFVKNI LYEDITLINA NFPIIIDQQY RDNAGQYKQS AGATAVKVSD VTFRSFTGTC 240 AAPIAIKLDC DPNTGCDNIV MEQINIASSS PKTPLTSYCK FAHVVSRFVS IPITCSFHTE 300 DSQPASLNPQ PSAPYAISPT TPHTQPHAPT TQPPLFFRFY TNFKAFLGRL GRNC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-62 | 13 | 292 | 289 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-65 | 13 | 295 | 291 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 7.0e-72 | 4 | 270 | 267 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-81 | 13 | 284 | 277 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 1.0e-82 | 5 | 274 | 270 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005575 | cellular_component |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA22565.1 | 1e-24 | 1 | 48 | 54 | 101 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA22565.1 | 0 | 145 | 354 | 103 | 312 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_194963.2 | 0 | 5 | 217 | 113 | 329 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_194964.2 | 0 | 1 | 354 | 1 | 354 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680757.1 | 0 | 1 | 336 | 62 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-24 | 36 | 246 | 133 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-20 | 22 | 239 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-20 | 22 | 239 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-20 | 22 | 239 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-20 | 22 | 239 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CV536748 | 247 | 6 | 250 | 0 |
| EY474520 | 226 | 44 | 269 | 0 |
| GT141262 | 207 | 63 | 269 | 0 |
| CA989936 | 232 | 61 | 292 | 0 |
| GO013888 | 228 | 69 | 296 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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