| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G33440.1 |
| Family | GH28 |
| Protein Properties | Length: 476 Molecular Weight: 52200.5 Isoelectric Point: 7.2487 |
| Chromosome | Chromosome/Scaffold: 4 Start: 16091940 End: 16094958 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 103 | 449 | 0 |
| AEGGAQLNVPEGTWLSGSFNLTSNFTLFLERGALILGSKDLDEWPIIEPLPSYGRGRERPGGRHISLIHGDNLTNVVITGENGTIDGQGKMWWELWWNRT LVHTRGHLIELKNSHNILISNLTLLNSPFWTIHPVYCSNVVIRNMTILAPMNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAVARPSSN IVIRRISGTTRTCSGVGIGSEMSGGIFNITVEDIHVWDSAAGLRIKTDKGRGGYISNITFNNVLLEKVKVPIRFSSGSNDHSDDKWDPKALPRVKGIYIS NVVSLNSRKAPMLLGVEGTSFQDVCLRNVTLLGLPKTEKWKCKDVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF 60 FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG FAAEGGAQLN VPEGTWLSGS 120 FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI 180 TGENGTIDGQ GKMWWELWWN RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS 240 NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS 300 SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI 360 TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY ISNVVSLNSR KAPMLLGVEG 420 TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-20 | 73 | 453 | 407 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-22 | 72 | 436 | 392 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-27 | 72 | 471 | 430 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-31 | 170 | 447 | 292 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 4.0e-58 | 71 | 384 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB38802.1 | 0 | 1 | 475 | 1 | 462 | putative protein [Arabidopsis thaliana] |
| EMBL | CAN76963.1 | 0 | 11 | 469 | 1 | 463 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37530.1 | 0 | 9 | 462 | 10 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195070.2 | 0 | 1 | 475 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002274138.1 | 0 | 9 | 462 | 10 | 467 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 66 | 435 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 66 | 435 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 66 | 435 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 66 | 435 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-26 | 116 | 448 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
