| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G33830.1 |
| Family | CBM22 |
| Protein Properties | Length: 577 Molecular Weight: 64870 Isoelectric Point: 6.464 |
| Chromosome | Chromosome/Scaffold: 4 Start: 16220324 End: 16222676 |
| Description | glycosyl hydrolase family 10 protein, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 47 | 162 | 1.9e-21 |
| IIVNPDMQNGSQGWSQFENAKVNFREFGGNKFVVATQRNQSSDSVSQKVYLEKGILYTFSAWLQVSTGKAPVSAVFKKNGEYKHAGSVVAESKCWSMLKG GLTVDESGPAELFVES | |||
| GH10 | 222 | 485 | 0 |
| KRLGFPFGSAVAQNILGNQAYQNWFTQRFTVTTFENEMKWYSTESVRGIENYTVADAMLRFFNQHGIAVRGHNVVWDHPKYQSKWVTSLSRNDLYNAVKR RVFSVVSRYKGQLAGWDVVNENLHHSFFESKFGPNASNNIFAMAHAIDPSTTMFMNEFYTLEDPTDLKASPAKYLEKLRELQSIRVRGNIPLGIGLESHF STPNIPYMRSALDTLGATGLPIWLTEIDVKAPSSDQAKYFEQVLREGHAHPHVKGMVTWTAYAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 577 Download |
| MKLLLLLPLA FCCLSLSRCE EILVPYDYSA TIECLEIPYK PQYNGGIIVN PDMQNGSQGW 60 SQFENAKVNF REFGGNKFVV ATQRNQSSDS VSQKVYLEKG ILYTFSAWLQ VSTGKAPVSA 120 VFKKNGEYKH AGSVVAESKC WSMLKGGLTV DESGPAELFV ESEDTTVEIW VDSVSLQPFT 180 QDEWNAHQEQ SIDNSRKGPV RIRVVNNKGE KIPNASITIE QKRLGFPFGS AVAQNILGNQ 240 AYQNWFTQRF TVTTFENEMK WYSTESVRGI ENYTVADAML RFFNQHGIAV RGHNVVWDHP 300 KYQSKWVTSL SRNDLYNAVK RRVFSVVSRY KGQLAGWDVV NENLHHSFFE SKFGPNASNN 360 IFAMAHAIDP STTMFMNEFY TLEDPTDLKA SPAKYLEKLR ELQSIRVRGN IPLGIGLESH 420 FSTPNIPYMR SALDTLGATG LPIWLTEIDV KAPSSDQAKY FEQVLREGHA HPHVKGMVTW 480 TAYAPNCYHM CLTDGNFKNL PTGDVVDKLI REWGGLRSQT TEVTDADGFF EASLFHGDYD 540 LNISHPLTNS SVSHNFTLTS DDSSLHTQPS TFVFRV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.002 | 45 | 165 | 132 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 4.0e-34 | 221 | 464 | 258 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-50 | 226 | 480 | 274 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 4.0e-82 | 259 | 506 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19865.1 | 0 | 34 | 576 | 2 | 544 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 27 | 576 | 119 | 669 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 399 | 505 | 2 | 109 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_195109.2 | 0 | 1 | 576 | 1 | 576 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195110.3 | 0 | 17 | 576 | 16 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 4e-28 | 228 | 506 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 6e-27 | 228 | 510 | 18 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1x_A | 2e-26 | 228 | 501 | 18 | 292 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1w_A | 2e-26 | 228 | 501 | 18 | 292 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 1e-25 | 228 | 501 | 18 | 292 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
