| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G33840.1 |
| Family | CBM22 |
| Protein Properties | Length: 577 Molecular Weight: 64878.2 Isoelectric Point: 7.1168 |
| Chromosome | Chromosome/Scaffold: 4 Start: 16223501 End: 16226153 |
| Description | glycosyl hydrolase family 10 protein, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 46 | 161 | 6.1e-22 |
| IIVNPDLQNGSQGWSQFGNAKVDFREFGGNKFVVATQRNQSSDSISQKVYLEKGILYTFSAWLQVSIGKSPVSAVFKKNGEYKHAGSVVAESKCWSMLKG GLTVDESGPAELFFES | |||
| GH10 | 222 | 480 | 0 |
| KLGYPFGCAVENNILGNQAYQNWFTQRFTVTTFGNEMKWYSTERIRGQEDYSTADAMLSFFKSHGIAVRGHNVLWDDPKYQPGWVNSLSGNDLYNAVKRR VYSVVSRYKGQLLGWDVVNENLHFSFFESKFGPKASYNTYTMAHAVDPRTPMFMNEYNTLEQPKDLTSSPARYLGKLRELQSIRVAGKIPLAIGLESHFS TPNIPYMRSALDTFGATGLPIWLTEIDVDAPPNVRANYFEQVLREGHAHPKVNGMVMWT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 577 Download |
| MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS 60 QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI LYTFSAWLQV SIGKSPVSAV 120 FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ 180 EEWNSHHEQS IGKVRKGTVR IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA 240 YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK 300 YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT 360 YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE LQSIRVAGKI PLAIGLESHF 420 STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT 480 GYSPSGCYRM CLTDGNFKNL PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD 540 LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.001 | 44 | 164 | 132 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-23 | 220 | 449 | 242 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-45 | 225 | 479 | 274 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-76 | 258 | 506 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19865.1 | 0 | 33 | 576 | 2 | 544 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 26 | 576 | 119 | 669 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 398 | 505 | 2 | 109 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_195109.2 | 0 | 9 | 576 | 10 | 576 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195110.3 | 0 | 1 | 576 | 1 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 9e-30 | 227 | 506 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0n_A | 1e-26 | 214 | 489 | 3 | 275 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0m_A | 1e-26 | 214 | 489 | 3 | 275 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0l_A | 1e-26 | 214 | 489 | 3 | 275 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0k_A | 1e-26 | 214 | 489 | 3 | 275 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
