| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G37950.1 |
| Family | PL4 |
| Protein Properties | Length: 679 Molecular Weight: 77332.3 Isoelectric Point: 9.7831 |
| Chromosome | Chromosome/Scaffold: 4 Start: 17844430 End: 17849274 |
| Description | rhamnogalacturonate lyase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 58 | 660 | 0 |
| DNQVVVDNGIIDVTFSSPQGLITRIKYNGLNNVLNDQIENRGYWDVVWYKPGQVSSTDYLVGTKFDIVNQTSEQIEISFSRTFSQRGSGIPLNVDKRYII RRGVSGIYMYAVLERLIGWPDVDMDQIRIVFKLNTTKFDFMAVSDNRQKIMPFDTDRDITKGRASPLAYKEAVHLINPQNHMLKGQVDDKYMYSVENKDN KVHGWISSDQRIGFWMITPSDEFHACGPIKQDLTSHVGPTTLSMFTSVHYAGKDMNTNYKSKEPWKKVFGPVFVYLNSASSRNLLWTDAKRQMVSEVQSW PYDFVKSVDYPLHHQRGTVKGQLFVIDRYIKNVTYLFGQFAFVGLALPGEAGSWQTENKGYQFWTRADKMGMFTIANVRPGTYSLYAWVSGFIGDYKYVR DITITPGREIDVGHIVYVPPRNGPTLWEIGQPDRTAAEFYIPDPDPTLFTKLYLNYSNPQDRFRQYGLWDRYSVLYPRNDLVFTAGVSDYKKDWFYAHVN RKAGNGTYKATTWQIKFNLKAVIQTRIYTLRIALAAASTIDLLVWVNEVDSKPLFITGLIGRDNAIARHGIHGLYKLYNIDVHGKLLRVGNNTIFLTHGR NSD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 679 Download |
| MEYGAPGMKA GRRVLTPLFV LVFLLQGVHS QTSRNKFNIA KAGHKLASPP VTLKKVGDNQ 60 VVVDNGIIDV TFSSPQGLIT RIKYNGLNNV LNDQIENRGY WDVVWYKPGQ VSSTDYLVGT 120 KFDIVNQTSE QIEISFSRTF SQRGSGIPLN VDKRYIIRRG VSGIYMYAVL ERLIGWPDVD 180 MDQIRIVFKL NTTKFDFMAV SDNRQKIMPF DTDRDITKGR ASPLAYKEAV HLINPQNHML 240 KGQVDDKYMY SVENKDNKVH GWISSDQRIG FWMITPSDEF HACGPIKQDL TSHVGPTTLS 300 MFTSVHYAGK DMNTNYKSKE PWKKVFGPVF VYLNSASSRN LLWTDAKRQM VSEVQSWPYD 360 FVKSVDYPLH HQRGTVKGQL FVIDRYIKNV TYLFGQFAFV GLALPGEAGS WQTENKGYQF 420 WTRADKMGMF TIANVRPGTY SLYAWVSGFI GDYKYVRDIT ITPGREIDVG HIVYVPPRNG 480 PTLWEIGQPD RTAAEFYIPD PDPTLFTKLY LNYSNPQDRF RQYGLWDRYS VLYPRNDLVF 540 TAGVSDYKKD WFYAHVNRKA GNGTYKATTW QIKFNLKAVI QTRIYTLRIA LAAASTIDLL 600 VWVNEVDSKP LFITGLIGRD NAIARHGIHG LYKLYNIDVH GKLLRVGNNT IFLTHGRNSD 660 SFSGVMYDYL RLEGPSGV* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 6.0e-32 | 372 | 470 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 3.0e-45 | 484 | 673 | 192 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-74 | 58 | 338 | 291 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 5.0e-98 | 8 | 244 | 240 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008150 | biological_process |
| GO:0016829 | lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS99719.1 | 0 | 1 | 675 | 1 | 674 | At2g22620 [Arabidopsis thaliana] |
| EMBL | CAA76417.1 | 0 | 244 | 678 | 1 | 435 | MYST1 [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 1 | 675 | 1 | 674 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_195508.2 | 0 | 1 | 678 | 1 | 678 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002527245.1 | 0 | 61 | 676 | 2 | 619 | lyase, putative [Ricinus communis] |
