| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G38300.1 |
| Family | GH10 |
| Protein Properties | Length: 278 Molecular Weight: 32103.4 Isoelectric Point: 6.3186 |
| Chromosome | Chromosome/Scaffold: 4 Start: 17944556 End: 17945491 |
| Description | glycosyl hydrolase family 10 protein, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 38 | 265 | 0 |
| ISKDFPIGSAISKTILGNIPYQEWFVKRFDATVFENELKWYATESDQGKLNYTLADKMMNLVRANRIIARGHNIFWEDPKYNPDWVRNLTGEDLRSAVNR RIKSLMTRYRGEFVHWDVSNEMLHFDFYESRLGKNVIDSLATLFFNDFNVVETCSDEKSTVDEYIARVRELQRYDGIRMDGIGLEGHFTTPNVALMRAIL DKLATLQLPIWLTEIDISSSLDHRSQVH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 278 Download |
| MWFPLNTHFQ ARKRAVTIHV SKENGESVEG AEVTVEQISK DFPIGSAISK TILGNIPYQE 60 WFVKRFDATV FENELKWYAT ESDQGKLNYT LADKMMNLVR ANRIIARGHN IFWEDPKYNP 120 DWVRNLTGED LRSAVNRRIK SLMTRYRGEF VHWDVSNEML HFDFYESRLG KNVIDSLATL 180 FFNDFNVVET CSDEKSTVDE YIARVRELQR YDGIRMDGIG LEGHFTTPNV ALMRAILDKL 240 ATLQLPIWLT EIDISSSLDH RSQVHKSLFS GLVQFAI* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 2.0e-32 | 37 | 255 | 244 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-47 | 36 | 263 | 250 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 8.0e-56 | 75 | 261 | 210 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0043169 | cation binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB37521.1 | 0 | 11 | 264 | 60 | 323 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_195543.1 | 0 | 1 | 277 | 1 | 277 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_195577.2 | 0 | 11 | 264 | 189 | 452 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277675.1 | 0 | 12 | 264 | 178 | 439 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002534153.1 | 0 | 12 | 263 | 102 | 362 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-25 | 44 | 257 | 15 | 241 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 2g4f_B | 3e-23 | 45 | 257 | 17 | 242 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 2g4f_A | 3e-23 | 45 | 257 | 17 | 242 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 2g3j_A | 3e-23 | 45 | 257 | 17 | 242 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 2g3i_A | 3e-23 | 45 | 257 | 17 | 242 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES803339 | 245 | 29 | 263 | 0 |
| FF353430 | 241 | 28 | 257 | 0 |
| GR953916 | 257 | 18 | 264 | 0 |
| DR372860 | 160 | 115 | 264 | 0 |
| DR372860 | 22 | 99 | 120 | 0.2 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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