| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G38590.1 |
| Family | GH35 |
| Protein Properties | Length: 989 Molecular Weight: 112102 Isoelectric Point: 6.5568 |
| Chromosome | Chromosome/Scaffold: 4 Start: 18036092 End: 18040928 |
| Description | beta-galactosidase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 1 | 282 | 0 |
| MWPSIIDKARIGGLNTIQTYVFWNVHEPEQGKYDFKGRFDLVKFIKLIHEKGLYVTLRLGPFIQAEWNHGGLPYWLREVPDVYFRTNNEPFKEHTERYVR KILGMMKEEKLFASQGGPIILGQIENEYNAVQLAYKENGEKYIKWAANLVESMNLGIPWVMCKQNDAPGNLINACNGRHCGDTFPGPNRHDKPSLWTENW TTQFRVFGDPPTQRTVEDIAFSVARYFSKNGSHVNYYMYHGGTNFGRTSAHFVTTRYYDDAPLDEFGLEKAPKYGHLKHVHR | |||
| Full Sequence |
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| Protein Sequence Length: 989 Download |
| MWPSIIDKAR IGGLNTIQTY VFWNVHEPEQ GKYDFKGRFD LVKFIKLIHE KGLYVTLRLG 60 PFIQAEWNHG GLPYWLREVP DVYFRTNNEP FKEHTERYVR KILGMMKEEK LFASQGGPII 120 LGQIENEYNA VQLAYKENGE KYIKWAANLV ESMNLGIPWV MCKQNDAPGN LINACNGRHC 180 GDTFPGPNRH DKPSLWTENW TTQFRVFGDP PTQRTVEDIA FSVARYFSKN GSHVNYYMYH 240 GGTNFGRTSA HFVTTRYYDD APLDEFGLEK APKYGHLKHV HRALRLCKKA LFWGQLRAQT 300 LGPDTEVRYY EQPGTKVCAA FLSNNNTRDT NTIKFKGQDY VLPSRSISIL PDCKTVVYNT 360 AQIVAQHSWR DFVKSEKTSK GLKFEMFSEN IPSLLDGDSL IPGELYYLTK DKTDYAWYTT 420 SVKIDEDDFP DQKGLKTILR VASLGHALIV YVNGEYAGKA HGRHEMKSFE FAKPVNFKTG 480 DNRISILGVL TGLPDSGSYM EHRFAGPRAI SIIGLKSGTR DLTENNEWGH LAGLEGEKKE 540 VYTEEGSKKV KWEKDGKRKP LTWYKTYFET PEGVNAVAIR MKAMGKGLIW VNGIGVGRYW 600 MSFLSPLGEP TQTEYHIPRS FMKGEKKKNM LVILEEEPGV KLESIDFVLV NRDTICSNVG 660 EDYPVSVKSW KREGPKIVSR SKDMRLKAVM RCPPEKQMVE VQFASFGDPT GTCGNFTMGK 720 CSASKSKEVV EKECLGRNYC SIVVARETFG DKGCPEIVKT LAVQVKCEKK EGKQDEKKKK 780 EDKDEEEEDD EDDDEEEEEE DKENKDTKDM ENKNQDILDS DSALVSDLGF GPFSTVVVNV 840 PLIGGAAPPQ PRFNLMPPSN YVAGLGRGAA GFTTRSDIGP ARANGDGNAD VNHKFDDFEG 900 HDAGLFANAE SDDQDKEADA IWDAIDRRMD SRRKDRREAK LKQEIENYRA SNPKVSGQFV 960 DLTRKLHTLS EDEWDSIPEI GNYSHRLY* 1020 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1874 | LacA | 3.0e-14 | 1 | 128 | 135 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam02140 | Gal_Lectin | 3.0e-20 | 690 | 767 | 81 | + Galactose binding lectin domain. | ||
| pfam06424 | PRP1_N | 3.0e-44 | 857 | 986 | 131 | + PRP1 splicing factor, N-terminal. This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression. | ||
| pfam01301 | Glyco_hydro_35 | 4.0e-135 | 1 | 284 | 298 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 1 | 767 | 795 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000398 | mRNA splicing, via spliceosome |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB37515.1 | 0 | 32 | 988 | 80 | 1036 | galactosidase like protein [Arabidopsis thaliana] |
| EMBL | CAB64750.1 | 0 | 1 | 817 | 71 | 887 | putative beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_001154292.1 | 0 | 1 | 988 | 69 | 1052 | glycosyl hydrolase family 35 protein [Arabidopsis thaliana] |
| RefSeq | NP_195571.2 | 0 | 1 | 988 | 1 | 988 | glycosyl hydrolase family 35 protein [Arabidopsis thaliana] |
| Swiss-Prot | Q9SCU8 | 0 | 1 | 817 | 71 | 887 | BGL14_ARATH RecName: Full=Beta-galactosidase 14; Short=Lactase 14; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 4e-36 | 2 | 280 | 39 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 2e-29 | 2 | 280 | 42 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 2e-29 | 2 | 280 | 42 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778160 | 666 | 1 | 639 | 0 |
| HO780602 | 593 | 21 | 605 | 0 |
| GR453801 | 261 | 63 | 323 | 0 |
| CO128575 | 296 | 1 | 296 | 0 |
| CO121155 | 290 | 26 | 315 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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