| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G38650.1 |
| Family | GH10 |
| Protein Properties | Length: 563 Molecular Weight: 63469.9 Isoelectric Point: 6.2827 |
| Chromosome | Chromosome/Scaffold: 4 Start: 18063166 End: 18065849 |
| Description | glycosyl hydrolase family 10 protein, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 217 | 477 | 0 |
| SKDFSIGSAISKTILGNIPYQEWFVKRFDATVFENELKWYATEPDQGKLNYTLADKMMNFVRANRIIARGHNIFWEDPKYNPDWVRNLTGEDLRSAVNRR IKSLMTRYRGEFVHWDVSNEMLHFDFYETRLGKNASYGFFAAAREIDSLATLFFNDFNVVETCSDEKSTVDEYIARVRELQRYDGVRMDGIGLEGHFTTP NVALMRAILDKLATLQLPIWLTEIDISSSLDHRSQAIYLEQVLREGFSHPSVNGIMLWTAL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 563 Download |
| MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK 60 PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE AGAASAHVRA RLRADNATLN 120 CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN 180 NQDYFINTAR KRAVTIHVSK ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF 240 VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW 300 VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR 360 EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD GVRMDGIGLE GHFTTPNVAL 420 MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN 480 GCYQMCLTDD KFRNLPAGDV VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG 540 KTVNSSFSLS QGPETKHVRL QI* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 9.0e-37 | 214 | 443 | 241 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-55 | 214 | 474 | 278 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-78 | 253 | 501 | 270 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| GO:0043169 | cation binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB37521.1 | 0 | 143 | 562 | 6 | 433 | putative protein [Arabidopsis thaliana] |
| EMBL | CBI37893.1 | 0 | 11 | 562 | 83 | 625 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195577.2 | 0 | 1 | 562 | 1 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277675.1 | 0 | 30 | 562 | 24 | 549 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002534153.1 | 0 | 92 | 562 | 6 | 473 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 1e-27 | 222 | 474 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 2e-26 | 244 | 505 | 40 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1x_A | 3e-26 | 244 | 507 | 40 | 303 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1w_A | 3e-26 | 244 | 507 | 40 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 7e-26 | 244 | 507 | 40 | 303 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
