| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G01220.1 |
| Family | GT4 |
| Protein Properties | Length: 511 Molecular Weight: 56630.3 Isoelectric Point: 8.6464 |
| Chromosome | Chromosome/Scaffold: 5 Start: 86585 End: 89986 |
| Description | glycosyl transferase, group 1 domain containing protein, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 305 | 452 | 1.9e-39 |
| EPEKPLVIHVGRIGVEKSLELLKSVMDKLPEARIAFIGDGPYKEDLEKLFTGMPAVFTGTLQGDELSQAYASGDVFVMPSESETLGLVVLEAMSSGLPVV AARAGGIPDIIPEDQEGKTGFLFNPGDVEDCVTKLRTLLHDRETREII | |||
| Full Sequence |
|---|
| Protein Sequence Length: 511 Download |
| MTTLSSINLS IPPHLLPSTT NTCSSSSATS CSPPRSSSFV LHSPLSFGHR RLPISKKSKL 60 RFCGVITKEA VSGSNDMTIT QVREDDESEI DAPLLDPESL SKPRRIALFV EPSPFAYVSG 120 YKNRFQNFIR YLREMGDEVI VVTTHEGVPE EFYGARVIGS RSFPCPYYQK VPLSLALSPR 180 IISEIARFKP DIIHASSPGV MVFGALAIAK MLSVPIVMSY HTHVPVYIPR YTFSWLVKPM 240 WSIIRFLHRA ADLTLVPSAA IGKDLIAAGA TAANQLRLWN KGVDSESFNP RFRSQEMRIR 300 LSNGEPEKPL VIHVGRIGVE KSLELLKSVM DKLPEARIAF IGDGPYKEDL EKLFTGMPAV 360 FTGTLQGDEL SQAYASGDVF VMPSESETLG LVVLEAMSSG LPVVAARAGG IPDIIPEDQE 420 GKTGFLFNPG DVEDCVTKLR TLLHDRETRE IIGKAAREET EKYDWRAATT KIRNEQYSAA 480 IWFWRKKKVH VLGPINWLIK RLFPVPEGNV * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03798 | GT1_wlbH_like | 3.0e-52 | 106 | 480 | 394 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| cd03801 | GT1_YqgM_like | 8.0e-72 | 105 | 473 | 379 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| TIGR00032 | argG | 6.0e-72 | 105 | 464 | 372 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
| TIGR00009 | L28 | 2.0e-130 | 105 | 468 | 367 | + ribosomal protein L28. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture and are not included [Protein synthesis, Ribosomal proteins: synthesis and modification]. | ||
| PLN02871 | PLN02871 | 0 | 46 | 510 | 465 | + UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008194 | UDP-glycosyltransferase activity |
| GO:0009058 | biosynthetic process |
| GO:0009247 | glycolipid biosynthetic process |
| GO:0009507 | chloroplast |
| GO:0009941 | chloroplast envelope |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK76635.1 | 0 | 77 | 510 | 1 | 434 | unknown protein [Arabidopsis thaliana] |
| EMBL | CAB69850.1 | 0 | 1 | 510 | 1 | 470 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_568085.2 | 0 | 1 | 510 | 1 | 510 | SQD2 (sulfoquinovosyldiacylglycerol 2); UDP-glycosyltransferase/ UDP-sulfoquinovose:DAG sulfoquinovosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002309122.1 | 0 | 74 | 507 | 1 | 433 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323560.1 | 0 | 77 | 507 | 1 | 428 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jjm_L | 0.000000000000004 | 130 | 458 | 38 | 363 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_K | 0.000000000000004 | 130 | 458 | 38 | 363 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_J | 0.000000000000004 | 130 | 458 | 38 | 363 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_I | 0.000000000000004 | 130 | 458 | 38 | 363 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_H | 0.000000000000004 | 130 | 458 | 38 | 363 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EG473715 | 299 | 197 | 495 | 0 |
| HO813118 | 319 | 153 | 471 | 0 |
| DV711665 | 301 | 183 | 483 | 0 |
| CO088719 | 290 | 85 | 374 | 0 |
| DC885557 | 285 | 163 | 447 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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