| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G09280.1 |
| Family | PL1 |
| Protein Properties | Length: 298 Molecular Weight: 32970.8 Isoelectric Point: 9.8877 |
| Chromosome | Chromosome/Scaffold: 5 Start: 2880423 End: 2881597 |
| Description | pectate lyase family protein, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 39 | 240 | 0 |
| KKWITFKRNMKIKLHKPLLISSFTALDGRGASVHISGPACLIVYRATDVIIHGLKIHDCKAHPPSSVMGPDSKIIQLGHMDGDAIRLVTAKKVWIDHNTL YDCEDGLLDVTLGSTDVTVSNNWFRNQDKVMLLGHDDGYVKDKDMRVTVVFNHFGPNCNQRMPRVRHGYAHVANNYYQGWTQYAIGGSMSPRVKSESNYF VA | |||
| Full Sequence |
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| Protein Sequence Length: 298 Download |
| MTGNIGKGVT QYKVTDPSDD PLNPKPGTLR YGATLVKGKK WITFKRNMKI KLHKPLLISS 60 FTALDGRGAS VHISGPACLI VYRATDVIIH GLKIHDCKAH PPSSVMGPDS KIIQLGHMDG 120 DAIRLVTAKK VWIDHNTLYD CEDGLLDVTL GSTDVTVSNN WFRNQDKVML LGHDDGYVKD 180 KDMRVTVVFN HFGPNCNQRM PRVRHGYAHV ANNYYQGWTQ YAIGGSMSPR VKSESNYFVA 240 PKSGSKEVLE KHGPITAQIK GSQSQTLNRL KYSLLQPERY TAPETPSVST TTLNMTF* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.009 | 57 | 164 | 110 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| COG3866 | PelB | 2.0e-24 | 58 | 238 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-56 | 60 | 238 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-73 | 47 | 242 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005575 | cellular_component |
| GO:0008150 | biological_process |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 1 | 248 | 1 | 248 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_196490.1 | 0 | 1 | 297 | 1 | 297 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002299118.1 | 0 | 1 | 260 | 32 | 292 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 253 | 32 | 284 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 248 | 60 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 6 | 253 | 35 | 284 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 6 | 253 | 35 | 284 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 7e-18 | 56 | 238 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 2e-16 | 80 | 261 | 83 | 263 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmv_A | 2e-16 | 80 | 261 | 83 | 263 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DR808308 | 225 | 1 | 218 | 0 |
| FD757999 | 200 | 54 | 253 | 0 |
| DT575750 | 160 | 92 | 251 | 0 |
| BQ505865 | 247 | 6 | 252 | 0 |
| EB425777 | 241 | 12 | 252 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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