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Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT5G14650.1 |
Family | GH28 |
Protein Properties | Length: 436 Molecular Weight: 46480.8 Isoelectric Point: 7.9549 |
Chromosome | Chromosome/Scaffold: 5 Start: 4724450 End: 4726513 |
Description | polygalacturonase, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 404 | 0 |
ACKVAASTLLVPSGSTFLVGPVSFLGKECKEKIVFQLEGKIIAPTSASAWGSGLLQWIEFKALQGITIKGKGIIDGRGSVWWNDMMGTKMPRTKPTALRF YGSNGVTVSGITIQNSPQTHLKFDNCISIQVSDFTTSSPGDSPNTDGIHLQNSQDAVIYRSTLACGDDCISIQTGCSNINIHDVDCGPGHGISIGGLGKD NTKACVSNITVRDVTMHETTNGVRIKSWQGGSGSVKQVMFSNIQVSNVANPIIIDQYYCDGGGCHNETSAVAVSNINYINIKGTYTKEPVRFACSDSLPC TGISLSTIELKPATGKASSLDPFCWKAH |
Full Sequence |
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Protein Sequence Length: 436 Download |
MCRLTLKCLS LNFLLLISLF SSRFGTCDAR YSVYWKGNRR SIAEGGSSGT INVLDHGAKG 60 DGTSDDTKAF EDAWQVACKV AASTLLVPSG STFLVGPVSF LGKECKEKIV FQLEGKIIAP 120 TSASAWGSGL LQWIEFKALQ GITIKGKGII DGRGSVWWND MMGTKMPRTK PTALRFYGSN 180 GVTVSGITIQ NSPQTHLKFD NCISIQVSDF TTSSPGDSPN TDGIHLQNSQ DAVIYRSTLA 240 CGDDCISIQT GCSNINIHDV DCGPGHGISI GGLGKDNTKA CVSNITVRDV TMHETTNGVR 300 IKSWQGGSGS VKQVMFSNIQ VSNVANPIII DQYYCDGGGC HNETSAVAVS NINYINIKGT 360 YTKEPVRFAC SDSLPCTGIS LSTIELKPAT GKASSLDPFC WKAHGELKTK TLPPIQCLKT 420 EKSPEAASRS NNDAC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-68 | 52 | 406 | 360 | + polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-68 | 47 | 430 | 392 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-68 | 80 | 386 | 309 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-76 | 50 | 394 | 352 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-94 | 53 | 414 | 369 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0012505 | endomembrane system |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 1 | 435 | 1 | 443 | polygalacturonase PG1 [Glycine max] |
GenBank | ACU24545.1 | 0 | 1 | 435 | 1 | 443 | unknown [Glycine max] |
DDBJ | BAH56488.1 | 0 | 4 | 435 | 3 | 510 | polygalacturonase 1 [Prunus persica] |
RefSeq | NP_196969.1 | 0 | 1 | 435 | 1 | 435 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002521450.1 | 0 | 21 | 423 | 22 | 458 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-26 | 82 | 341 | 41 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-26 | 142 | 386 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-26 | 142 | 386 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-26 | 142 | 386 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-26 | 142 | 386 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |