Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT5G15110.1 |
Family | PL1 |
Protein Properties | Length: 473 Molecular Weight: 53837 Isoelectric Point: 9.3649 |
Chromosome | Chromosome/Scaffold: 5 Start: 4895750 End: 4897682 |
Description | pectate lyase precursor, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 184 | 389 | 0 |
IQKEPLWIIFKNDMSIRLNQELLINSHKTIDARGANVHVAHGAGITMQFVKNVVIHGLHIHHISESSGGMIRDSVDHFGMRTRADGDGLSIYGSSNIWLD HISMSKCQDGLIDAIVGSTGITISNSHFTHHNDVMLLGAQNTNEADKHMQVTVAYNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQGPTILSH GNRFIA |
Full Sequence |
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Protein Sequence Length: 473 Download |
MEMVRLSKLM FTFCIAVLIP TIRGNISELD EYWSQRADEA REFTLQAYHS DPYEIVDHFH 60 ERHYDNSTDV TTPEEDGDAK PEEEEKEFIE MLGSSTNSTR RSLRGKGKGK WSKLKGPCTA 120 SNPIDKCWRC RSDWAKRRKK LTRCVRGFGH RTTGGKRGRI YVVTSNLDED MVNPKPGTLR 180 HAVIQKEPLW IIFKNDMSIR LNQELLINSH KTIDARGANV HVAHGAGITM QFVKNVVIHG 240 LHIHHISESS GGMIRDSVDH FGMRTRADGD GLSIYGSSNI WLDHISMSKC QDGLIDAIVG 300 STGITISNSH FTHHNDVMLL GAQNTNEADK HMQVTVAYNH FGKGLVQRMP RIRWGFVHVV 360 NNDYTHWELY AIGGSQGPTI LSHGNRFIAP PHKPHYREVT KRDYASEDEW KHWNWRSDKD 420 VFMNGAYFRQ SGNPQYKCAH TRQQMIKPKN GLAVSKLTKY AGALDCRVGR RC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 8.0e-18 | 25 | 71 | 47 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-25 | 152 | 387 | 254 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-62 | 203 | 387 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-72 | 196 | 391 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0008150 | biological_process |
GO:0012505 | endomembrane system |
GO:0016829 | lyase activity |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM60924.1 | 0 | 1 | 472 | 1 | 475 | putative pectate lyase [Arabidopsis thaliana] |
GenBank | ABK28696.1 | 0 | 1 | 472 | 1 | 472 | unknown [Arabidopsis thaliana] |
RefSeq | NP_186776.1 | 0 | 1 | 472 | 1 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_197015.4 | 0 | 1 | 472 | 1 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
Swiss-Prot | Q9LFP5 | 0 | 1 | 472 | 1 | 472 | PEL19_ARATH RecName: Full=Putative pectate lyase 19; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 122 | 464 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 122 | 464 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-17 | 191 | 389 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000005 | 205 | 387 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000003 | 200 | 387 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |