| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G17200.1 |
| Family | GH28 |
| Protein Properties | Length: 422 Molecular Weight: 45234.2 Isoelectric Point: 8.4884 |
| Chromosome | Chromosome/Scaffold: 5 Start: 5653524 End: 5655336 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 62 | 410 | 0 |
| WEAVCKGGHNRKILVPQGKTFMLKPLTFIGPCKSSTISLSIRGNLVAPGYTWYAGRYTTWISFDSINGLVVTGGGTIDGRGSLWWGNVNNRPCAMHFNNC NGLRISNLRHLNSPRNHVGLSCSQNIEVRGLRMTAPGDSPNTDGIDISNCIGVHIHDSVIATGDDCIAINSGSSHINITGIFCGPGHGISVGSLGVTGDF ETVEEVRVKNCTFTKTQNGVRIKTYQNGSGYARKISFEDINMVASENPIIIDQTYHNGGTNGGISKSSSSYQNCHLTAKQRTPSGNGKGVKVTDVRYARI RGSSASDQDITLNCDADLGCSDIVMDNVNMVSATFGHKLFSSCKNAHGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 422 Download |
| MKSSLFFVLL CLFQINKLCF CLEEESLKVK NGFGSNGFIS VTSFGAIGDG KTDDTKAFLK 60 AWEAVCKGGH NRKILVPQGK TFMLKPLTFI GPCKSSTISL SIRGNLVAPG YTWYAGRYTT 120 WISFDSINGL VVTGGGTIDG RGSLWWGNVN NRPCAMHFNN CNGLRISNLR HLNSPRNHVG 180 LSCSQNIEVR GLRMTAPGDS PNTDGIDISN CIGVHIHDSV IATGDDCIAI NSGSSHINIT 240 GIFCGPGHGI SVGSLGVTGD FETVEEVRVK NCTFTKTQNG VRIKTYQNGS GYARKISFED 300 INMVASENPI IIDQTYHNGG TNGGISKSSS SYQNCHLTAK QRTPSGNGKG VKVTDVRYAR 360 IRGSSASDQD ITLNCDADLG CSDIVMDNVN MVSATFGHKL FSSCKNAHGS LFASKVDCLK 420 H* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-83 | 1 | 407 | 418 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-85 | 39 | 408 | 381 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-94 | 41 | 410 | 382 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 7.0e-107 | 40 | 409 | 373 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-109 | 33 | 420 | 392 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 5 | 421 | 3 | 398 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 6 | 419 | 4 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_197222.1 | 0 | 1 | 421 | 1 | 421 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 18 | 419 | 9 | 394 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 15 | 419 | 6 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-23 | 74 | 406 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-23 | 74 | 406 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-23 | 74 | 406 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-23 | 74 | 406 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-23 | 74 | 406 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
