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Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT5G18220.1 |
Family | CBM43 |
Protein Properties | Length: 489 Molecular Weight: 53866 Isoelectric Point: 5.9259 |
Chromosome | Chromosome/Scaffold: 5 Start: 6018914 End: 6020453 |
Description | glucan endo-1,3-beta-glucosidase precursor, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 369 | 454 | 3.6e-24 |
WCMFNPNALTFSNNTNQLGDNVNYACTFSDCTALGYGSSCGNLDEVGNASYAFNMYFQVQNQKAEACDFEGLAIITTRNISREQCN | |||
GH17 | 30 | 346 | 0 |
LGVNWGTMSTHQLPPKTVVQMLKDNNVKKVKLFDADTNTMVALAGSGIEVMVAIPNDQLKAMGSYNRAKDWVRRNITRFNDDVKIKYVAVGNEPFLTAYN GSFINLTYPALFNIQKALNEAGVGDFIKATVPLNADVYNSPLENPVPSAGSFRQDIFEEMKLIVNFLAHNKAPFTVNIYPFLSLYLSSDFPFDYAFFNGQ NTVSDNGVIYTNVFDANFDTLLASLKALGHGDMTVIVGEVGWPTDGDKNANIPNAERFYTGLLPKLAANRGTPMRPGYIEVYLFGFIDEDAKSIAPGNFE RHWGIFKYDGQPKFPAD |
Full Sequence |
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Protein Sequence Length: 489 Download |
MSNRRKQSTT AGIFLCITIV SLLSGDVSAL GVNWGTMSTH QLPPKTVVQM LKDNNVKKVK 60 LFDADTNTMV ALAGSGIEVM VAIPNDQLKA MGSYNRAKDW VRRNITRFND DVKIKYVAVG 120 NEPFLTAYNG SFINLTYPAL FNIQKALNEA GVGDFIKATV PLNADVYNSP LENPVPSAGS 180 FRQDIFEEMK LIVNFLAHNK APFTVNIYPF LSLYLSSDFP FDYAFFNGQN TVSDNGVIYT 240 NVFDANFDTL LASLKALGHG DMTVIVGEVG WPTDGDKNAN IPNAERFYTG LLPKLAANRG 300 TPMRPGYIEV YLFGFIDEDA KSIAPGNFER HWGIFKYDGQ PKFPADLSGA GQKKILTGAQ 360 NVQYLRNQWC MFNPNALTFS NNTNQLGDNV NYACTFSDCT ALGYGSSCGN LDEVGNASYA 420 FNMYFQVQNQ KAEACDFEGL AIITTRNISR EQCNFPIQIG DPTSGHSDHN HRFISFSLVS 480 MLLLFTAL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 6.0e-6 | 222 | 338 | 121 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 9.0e-19 | 368 | 442 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-29 | 368 | 455 | 90 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-77 | 30 | 346 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0031225 | anchored to membrane |
GO:0043169 | cation binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_176656.1 | 0 | 31 | 459 | 26 | 452 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_179534.1 | 0 | 27 | 459 | 18 | 448 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_187051.3 | 0 | 1 | 488 | 1 | 486 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_197323.1 | 0 | 1 | 488 | 1 | 488 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002277003.1 | 0 | 14 | 459 | 8 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 30 | 343 | 3 | 310 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 3ur8_A | 0 | 30 | 343 | 3 | 310 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 3ur7_B | 0 | 30 | 343 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 30 | 343 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 30 | 343 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |