| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G24318.1 |
| Family | CBM43 |
| Protein Properties | Length: 459 Molecular Weight: 50765.6 Isoelectric Point: 5.7636 |
| Chromosome | Chromosome/Scaffold: 5 Start: 8281976 End: 8284001 |
| Description | glucan endo-1,3-beta-glucosidase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 372 | 454 | 4e-30 |
| WCVTKAGAETVALQRNIDYVCGLGLDCRPINEGGLCYLPNTVKAHSKYAMNLYYQTMEKHEFDCDFDNTGEITTIDPSYGNCE | |||
| GH17 | 30 | 344 | 0 |
| IGVNYGTLANNLPPPQQVAEFLLHSTVINRIRLFDTDPQILQAFANTGIAVTVTVPNDQIPHLTNLSSAKQWISDHIQPHFPSTNIIRILVGNEVISTAD HLLIRTLIPAMQSLHTALVSASLHRRIQISTPHSLGTLTNSTPPSSAKFRRGYDAQVLKPLLSFLRSTSSPFVVNPYPFFGYSIETLDFALFRPNPGLFD QHTKLLYTNMLDAQLDSVYSAMDKLGFSDVEIVIGEIGWPSEGDIDQIGVDVDTAAEFNKNLIARVDSGTGTPLMPNRTFETYIFALFNENLKSGPTSER NFGIFRSDLTPIYDI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MNYVLPFFSL SMFTIVGVLL ILSTGSEASI GVNYGTLANN LPPPQQVAEF LLHSTVINRI 60 RLFDTDPQIL QAFANTGIAV TVTVPNDQIP HLTNLSSAKQ WISDHIQPHF PSTNIIRILV 120 GNEVISTADH LLIRTLIPAM QSLHTALVSA SLHRRIQIST PHSLGTLTNS TPPSSAKFRR 180 GYDAQVLKPL LSFLRSTSSP FVVNPYPFFG YSIETLDFAL FRPNPGLFDQ HTKLLYTNML 240 DAQLDSVYSA MDKLGFSDVE IVIGEIGWPS EGDIDQIGVD VDTAAEFNKN LIARVDSGTG 300 TPLMPNRTFE TYIFALFNEN LKSGPTSERN FGIFRSDLTP IYDIGILRPT FRSSDPVYNP 360 RSPVRGSSSK RWCVTKAGAE TVALQRNIDY VCGLGLDCRP INEGGLCYLP NTVKAHSKYA 420 MNLYYQTMEK HEFDCDFDNT GEITTIDPSY GNCEYQAN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 3.0e-17 | 371 | 441 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-36 | 372 | 455 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-93 | 30 | 344 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| GO:0043169 | cation binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23036.1 | 0 | 12 | 455 | 1 | 458 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_001031936.1 | 0 | 24 | 458 | 24 | 458 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_001119271.1 | 0 | 24 | 449 | 24 | 449 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002318439.1 | 0 | 6 | 455 | 4 | 463 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526252.1 | 0 | 15 | 449 | 13 | 466 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 30 | 344 | 3 | 312 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
| PDB | 3ur8_A | 0 | 30 | 344 | 3 | 312 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
| PDB | 3ur7_B | 0 | 30 | 344 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 30 | 344 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 0 | 30 | 344 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
