| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G27530.1 |
| Family | GH28 |
| Protein Properties | Length: 459 Molecular Weight: 49649.8 Isoelectric Point: 4.5508 |
| Chromosome | Chromosome/Scaffold: 5 Start: 9717503 End: 9721097 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 82 | 398 | 0 |
| GEENINTLFIPSGKTYLLQPIEFKGPCKSTSIKLQLDGIIVAPSNITSWSNPKSQTWISFSGVPGLMIDGSGTINGRGSSFWEALHICNCNNLTINGITS IDSPKSHISIKNCHYVAISKINILAPENSPNTDGIDISYSTNVNIFDSTIQTGDDCIAINTGSSSINITQVNCGPGHGISVGSLGADGENAAVSDVYVTQ CTFNKTTNGARIKTWQGGQGYARNISFENITLINVQNPIIIDQQYTDKVLLDATKDSAVAISSVKYVGFQGTTLNEDAIMLKCSAITYCKDMVIDDIEVT MENGEKPKVECENVEGE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MEDMVTIQKN GDIPAFVRVT TQWHGLMSFP ETILRISILI NFICFGLVNG QIYNVLKFGA 60 EGDGQTDDSN AFLQAWNATC GGEENINTLF IPSGKTYLLQ PIEFKGPCKS TSIKLQLDGI 120 IVAPSNITSW SNPKSQTWIS FSGVPGLMID GSGTINGRGS SFWEALHICN CNNLTINGIT 180 SIDSPKSHIS IKNCHYVAIS KINILAPENS PNTDGIDISY STNVNIFDST IQTGDDCIAI 240 NTGSSSINIT QVNCGPGHGI SVGSLGADGE NAAVSDVYVT QCTFNKTTNG ARIKTWQGGQ 300 GYARNISFEN ITLINVQNPI IIDQQYTDKV LLDATKDSAV AISSVKYVGF QGTTLNEDAI 360 MLKCSAITYC KDMVIDDIEV TMENGEKPKV ECENVEGESS DNDLMRECFN SNSTFSGGSV 420 GGFGWVYECP CVRMGGPNWR FSSRISRTFL DPSSFHVH* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-81 | 86 | 395 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-88 | 52 | 408 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 2.0e-98 | 51 | 401 | 367 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-112 | 42 | 400 | 377 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 0 | 4 | 408 | 405 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005575 | cellular_component |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC79138.1 | 0 | 31 | 409 | 2 | 379 | putative polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA20037.1 | 0 | 40 | 414 | 1 | 373 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 31 | 414 | 2 | 393 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_198105.2 | 0 | 1 | 458 | 1 | 458 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199297.1 | 0 | 31 | 411 | 2 | 381 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-21 | 148 | 395 | 74 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-21 | 148 | 395 | 74 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-21 | 148 | 395 | 74 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-21 | 148 | 395 | 74 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-21 | 148 | 395 | 74 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CV536748 | 259 | 119 | 364 | 0 |
| CX192293 | 249 | 89 | 330 | 0 |
| DY281549 | 320 | 53 | 357 | 0 |
| CV538127 | 233 | 80 | 299 | 0 |
| DY961682 | 268 | 47 | 296 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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