| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G39910.1 |
| Family | GH28 |
| Protein Properties | Length: 374 Molecular Weight: 41949.5 Isoelectric Point: 6.6465 |
| Chromosome | Chromosome/Scaffold: 5 Start: 15979412 End: 15981671 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 68 | 281 | 0 |
| SESIMEIPEGNTFLLQPIEFHGPCKSKKIILSISGNLIAPESPYEWKCNKDDCHQWIEFAHINGLYIDGHGLMACLKRPRGVVISHSSNVHISNIMVKDS PNFQMSLEDSKWVIVKQLTITADGDSPNTDGIHIQRSQNVIVYDSNIRTGDDCISIGDGSKYINISRISCGPGHGISIGSLGRYGTKETVENVVVRDCTF RETTNGVRIKTWQT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 374 Download |
| MANFVMFLNF LLSLTVFHTF QSVQSHFSLY NDNNIFNVLN YGAIGDGFSD DSKAFKDAWE 60 DTCNYIGSES IMEIPEGNTF LLQPIEFHGP CKSKKIILSI SGNLIAPESP YEWKCNKDDC 120 HQWIEFAHIN GLYIDGHGLM ACLKRPRGVV ISHSSNVHIS NIMVKDSPNF QMSLEDSKWV 180 IVKQLTITAD GDSPNTDGIH IQRSQNVIVY DSNIRTGDDC ISIGDGSKYI NISRISCGPG 240 HGISIGSLGR YGTKETVENV VVRDCTFRET TNGVRIKTWQ TKAVEIKNVM FNHIHGTSIK 300 KPFVQLLCSK SVPCRDIFMN DINIHDENEE EEKKYHKSLS RHDDHPSAEC INVKGESNGV 360 MKPKLACLES KRH* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-60 | 37 | 311 | 297 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 7.0e-69 | 7 | 369 | 413 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 3.0e-69 | 30 | 364 | 393 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 2.0e-69 | 27 | 358 | 377 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 6.0e-70 | 35 | 319 | 342 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB10216.1 | 0 | 1 | 373 | 1 | 411 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI15274.1 | 0 | 32 | 372 | 22 | 385 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_198807.1 | 0 | 1 | 373 | 1 | 373 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267182.1 | 0 | 34 | 368 | 24 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002321662.1 | 0 | 22 | 368 | 13 | 352 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000000001 | 146 | 304 | 151 | 309 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.00000000000007 | 86 | 301 | 61 | 261 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.00000000000007 | 86 | 301 | 61 | 261 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.00000000000007 | 86 | 301 | 61 | 261 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.0000000000008 | 133 | 295 | 87 | 250 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
