| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G41870.1 |
| Family | GH28 |
| Protein Properties | Length: 450 Molecular Weight: 48644 Isoelectric Point: 7.3685 |
| Chromosome | Chromosome/Scaffold: 5 Start: 16758709 End: 16760576 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 420 | 0 |
| NNSNEGTLLYVPRGVYLTQSFNLTSHMTLYLADGAVIKAVQDTEKWPLTDPLPSYGRGREHPGRRYISFIHGDGLNDVVITGRNGTIDGQGEPWWNMWRH GTLKFTRPGLIEFNNSTNILVSHVVLQNSPFWTLHPVYCSNVVVHHVTILAPTDSYNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYNRPS RDITIRRITGSSPFAGIAIGSETSGGIQNVTVENITLYNSGIGIHIKTNIGRGGSIQGITISGVYLEKVRTGIKISGDTGDHPDDKFNTSALPIVRGITI KNVWGIKVERAGMVQGLKDSPFTNLCFSNVTLTGTKRSPIWKCSDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 450 Download |
| MKISQAPISV FVLFLLSTVL PHHLSLGAPI TCSGIVPMKH RNEMLSISDF GAVGDGKTLN 60 TKAFNSAIDR IRNSNNSNEG TLLYVPRGVY LTQSFNLTSH MTLYLADGAV IKAVQDTEKW 120 PLTDPLPSYG RGREHPGRRY ISFIHGDGLN DVVITGRNGT IDGQGEPWWN MWRHGTLKFT 180 RPGLIEFNNS TNILVSHVVL QNSPFWTLHP VYCSNVVVHH VTILAPTDSY NTDGIDPDSS 240 SNVCIEDSYI STGDDLVAVK SGWDEYGIAY NRPSRDITIR RITGSSPFAG IAIGSETSGG 300 IQNVTVENIT LYNSGIGIHI KTNIGRGGSI QGITISGVYL EKVRTGIKIS GDTGDHPDDK 360 FNTSALPIVR GITIKNVWGI KVERAGMVQG LKDSPFTNLC FSNVTLTGTK RSPIWKCSDV 420 VGAADKVNPT PCPELSATTQ QGGSCENQS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 8.0e-23 | 44 | 432 | 412 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-25 | 45 | 436 | 405 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-28 | 45 | 412 | 386 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-32 | 143 | 420 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-58 | 45 | 357 | 339 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 13 | 438 | 8 | 434 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 10 | 447 | 8 | 445 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 13 | 438 | 8 | 434 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199002.1 | 0 | 1 | 449 | 1 | 449 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002509949.1 | 0 | 11 | 448 | 13 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8e-40 | 45 | 412 | 28 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8e-40 | 45 | 412 | 28 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8e-40 | 45 | 412 | 28 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8e-40 | 45 | 412 | 28 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-22 | 75 | 377 | 34 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
