| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G44830.1 |
| Family | GH28 |
| Protein Properties | Length: 333 Molecular Weight: 36363 Isoelectric Point: 6.8584 |
| Chromosome | Chromosome/Scaffold: 5 Start: 18100128 End: 18101885 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 4 | 318 | 0 |
| SGGNSKTFLIPSNQTFLLQPLTFQGPCKSPSVQVKFDGKIVAPINKAAWSESKLFRWVSFKEIIGLTVNGSGTIHGRGSSFWKQLHFQRCNDLKIIGITS FNSPRNHISISECKRVQLTKIKLVAPEDSPNTDGINISGSSDVDVYDTFIGTGDDCVAINNGSVNINITRMNCGPGHGISVGSLGRDGEESIVENVQVTN CTFFRTDNGVRIKTWPNGKGYARNILFKDLTFRESKNPIIIDQNYVDKGRLDVEESAVAISNVTFTDIRGTSQRNEIIKIDCSEVTYCKDIVLDKIDIAT VDGNKPVVECSNVYG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 333 Download |
| MCGSGGNSKT FLIPSNQTFL LQPLTFQGPC KSPSVQVKFD GKIVAPINKA AWSESKLFRW 60 VSFKEIIGLT VNGSGTIHGR GSSFWKQLHF QRCNDLKIIG ITSFNSPRNH ISISECKRVQ 120 LTKIKLVAPE DSPNTDGINI SGSSDVDVYD TFIGTGDDCV AINNGSVNIN ITRMNCGPGH 180 GISVGSLGRD GEESIVENVQ VTNCTFFRTD NGVRIKTWPN GKGYARNILF KDLTFRESKN 240 PIIIDQNYVD KGRLDVEESA VAISNVTFTD IRGTSQRNEI IKIDCSEVTY CKDIVLDKID 300 IATVDGNKPV VECSNVYGKS INTNDANGCF ED* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-73 | 2 | 329 | 350 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-81 | 2 | 316 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 8.0e-83 | 2 | 332 | 348 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-91 | 4 | 320 | 331 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 2.0e-138 | 2 | 332 | 332 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005575 | cellular_component |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC79138.1 | 0 | 1 | 332 | 50 | 381 | putative polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA20037.1 | 0 | 2 | 332 | 41 | 370 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 2 | 332 | 51 | 390 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199296.1 | 0 | 1 | 332 | 1 | 332 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199297.1 | 0 | 1 | 331 | 50 | 380 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-16 | 69 | 316 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-16 | 69 | 316 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-16 | 69 | 316 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-16 | 69 | 316 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-16 | 69 | 316 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CX192293 | 250 | 11 | 253 | 0 |
| CV536748 | 258 | 41 | 285 | 0 |
| GO844129 | 310 | 8 | 291 | 0 |
| CV538127 | 233 | 2 | 221 | 0 |
| EY474520 | 231 | 88 | 318 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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