| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G44840.1 |
| Family | GH28 |
| Protein Properties | Length: 382 Molecular Weight: 41565.5 Isoelectric Point: 7.8553 |
| Chromosome | Chromosome/Scaffold: 5 Start: 18104851 End: 18107127 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 48 | 367 | 0 |
| SAMCGSGGNSKTFIIPSNKTFLLQPLTFQGPCKSPSVQVKFDGKIVAPINKAAWSDYKLFRWVSFKEIIGLTVNGSGTIHGRGSSFWKQLHFQRCNDLMI TGITSFNSPKNHISISECKRVKITKIKLVAPHDSPNTDGINISESSDVDIYDTVIGTGDDCVAINSGSMNINIARMNCGPGHGISVGSVGRDGEESIVEN VQVTNCTFIRTDNGARIKTWPNGKGYAKNILFKSLTFRETKNPIIIDQNYVDKGRLDVEESAVAISNVTFTDLRGTSKLDEIIKIDCSKVTYCKDIVLDK IDIATVDGNKPIVECSNVYG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 382 Download |
| MEIILRGVFL LTLLHSILVN GQIYDVLEFG ADGNGITDDS KAFVKAWSAM CGSGGNSKTF 60 IIPSNKTFLL QPLTFQGPCK SPSVQVKFDG KIVAPINKAA WSDYKLFRWV SFKEIIGLTV 120 NGSGTIHGRG SSFWKQLHFQ RCNDLMITGI TSFNSPKNHI SISECKRVKI TKIKLVAPHD 180 SPNTDGINIS ESSDVDIYDT VIGTGDDCVA INSGSMNINI ARMNCGPGHG ISVGSVGRDG 240 EESIVENVQV TNCTFIRTDN GARIKTWPNG KGYAKNILFK SLTFRETKNP IIIDQNYVDK 300 GRLDVEESAV AISNVTFTDL RGTSKLDEII KIDCSKVTYC KDIVLDKIDI ATVDGNKPIV 360 ECSNVYGKSI NANEANGCFK T* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-81 | 51 | 365 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-86 | 23 | 370 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 3.0e-92 | 22 | 379 | 375 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-106 | 17 | 369 | 367 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 7.0e-160 | 1 | 381 | 382 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC79138.1 | 0 | 1 | 380 | 1 | 380 | putative polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA20037.1 | 0 | 18 | 380 | 8 | 369 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_198105.2 | 0 | 2 | 381 | 31 | 411 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199296.1 | 0 | 50 | 380 | 1 | 331 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199297.1 | 0 | 1 | 381 | 1 | 381 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 6e-17 | 126 | 365 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-17 | 126 | 365 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-17 | 126 | 365 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 6e-17 | 126 | 365 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 6e-17 | 126 | 365 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
