| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G48900.1 |
| Family | PL1 |
| Protein Properties | Length: 418 Molecular Weight: 46727.7 Isoelectric Point: 8.6763 |
| Chromosome | Chromosome/Scaffold: 5 Start: 19825137 End: 19829092 |
| Description | pectate lyase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 131 | 336 | 0 |
| IQEEPLWIVFKRDMVITLKEELIMNSFKTIDGRGVNVHIANGACITIQFVTNIIIHGIHIHDCRPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWID HNSLSNCADGLIDAVMASTAITISNNYFTHHNEVMLLGHSDTYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQ GNRYLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 418 Download |
| MAVTQILVVF ASALLLSMFF TGVDSTRSNE TWHEHAVENP EEVAAMVDMS IRNSTARRRL 60 GYFSCSTGNP IDDCWRCDRR WQSRRKHLAN CAIGFGRNAI GGRDGRYYVV SDPNDDNPVN 120 PKPGTLRHAV IQEEPLWIVF KRDMVITLKE ELIMNSFKTI DGRGVNVHIA NGACITIQFV 180 TNIIIHGIHI HDCRPTGNAM VRSSPSHYGW RTMADGDGIS IFGSSHIWID HNSLSNCADG 240 LIDAVMASTA ITISNNYFTH HNEVMLLGHS DTYTRDKVMQ VTIAYNHFGE GLIQRMPRCR 300 HGYFHVVNND YTHWEMYAIG GSASPTINSQ GNRYLAPRNR FAKEVTKRDY AGQWQWRHWN 360 WRSEGDLFLN GAFFTRSGSG LGASYARASS LAAKSSSLVG VITYNAGALN CRGGRRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-27 | 156 | 332 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-70 | 149 | 334 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-80 | 143 | 338 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0012505 | endomembrane system |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61584.1 | 0 | 1 | 417 | 1 | 416 | putative pectate lyase [Arabidopsis thaliana] |
| GenBank | AAM63307.1 | 0 | 1 | 417 | 1 | 417 | pectate lyase [Arabidopsis thaliana] |
| DDBJ | BAB10313.1 | 0 | 25 | 417 | 2 | 393 | pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_187357.1 | 0 | 1 | 417 | 1 | 416 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568705.1 | 0 | 1 | 417 | 1 | 417 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 69 | 409 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 69 | 409 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-17 | 138 | 336 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000004 | 159 | 311 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.000000000005 | 159 | 346 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
