| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G49215.1 |
| Family | GH28 |
| Protein Properties | Length: 450 Molecular Weight: 48758.7 Isoelectric Point: 5.5125 |
| Chromosome | Chromosome/Scaffold: 5 Start: 19953487 End: 19956116 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 423 | 0 |
| DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKDAVILASQDPSHWQVTDALPSYGRGIDLPGKRYMSLINGDMLHDVVVTGDNGTIDGQGLVWWDRFNSHS LEYSRPHLVEFVSAENVIVSNLTFLNAPAYTIHSVYCRNLYIHRVTANTCPESPYTIGIVPDSSENVCIQESSINMGYDAISLKSGCDEYGLSYARPTAN VQIRNVYLRAASGSSISFGSEMSGGISDVEVSDAHIHNSLSGIAFRTTNGRGGYIKEIDISNIHMVNVGTAFLANGSFGTHPDSGFDENAYPLVSHIRLH DIVGENISTAGYFFGTKESPFTSILLSNISLSIKNSASPADSWQCSYVDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 450 Download |
| MPVSVALVLL LTLSSVILIN GRSYGVGNIC DRGRRPSERP HSVKITDFGA VGDGKTLNTL 60 AFQNAVFYLK SFADKGGAQL YVPPGRWLTG SFNLTSHLTL FLEKDAVILA SQDPSHWQVT 120 DALPSYGRGI DLPGKRYMSL INGDMLHDVV VTGDNGTIDG QGLVWWDRFN SHSLEYSRPH 180 LVEFVSAENV IVSNLTFLNA PAYTIHSVYC RNLYIHRVTA NTCPESPYTI GIVPDSSENV 240 CIQESSINMG YDAISLKSGC DEYGLSYARP TANVQIRNVY LRAASGSSIS FGSEMSGGIS 300 DVEVSDAHIH NSLSGIAFRT TNGRGGYIKE IDISNIHMVN VGTAFLANGS FGTHPDSGFD 360 ENAYPLVSHI RLHDIVGENI STAGYFFGTK ESPFTSILLS NISLSIKNSA SPADSWQCSY 420 VDGSSEFVVP EPCLELKSFD SYYGRAEAL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-12 | 36 | 341 | 319 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-17 | 41 | 438 | 406 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-18 | 148 | 393 | 250 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-20 | 38 | 341 | 320 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 2.0e-39 | 35 | 355 | 343 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65366.1 | 0 | 71 | 446 | 2 | 375 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001032043.1 | 0 | 1 | 449 | 1 | 447 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566292.1 | 0 | 71 | 446 | 2 | 375 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680409.1 | 0 | 1 | 449 | 1 | 449 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_850525.1 | 0 | 3 | 446 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-26 | 29 | 341 | 14 | 351 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-26 | 29 | 341 | 14 | 351 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-26 | 29 | 341 | 14 | 351 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-26 | 29 | 341 | 14 | 351 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.0000000000001 | 35 | 346 | 149 | 495 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
