| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G55180.1 |
| Family | CBM43 |
| Protein Properties | Length: 461 Molecular Weight: 49361.9 Isoelectric Point: 5.5351 |
| Chromosome | Chromosome/Scaffold: 5 Start: 22388782 End: 22390714 |
| Description | glucan endo-1,3-beta-glucosidase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 372 | 455 | 1e-33 |
| WCVANGKTTKEKLQEGLDYACGEGGADCRPIQPGATCYNPESLEAHASYAFNSYYQKNARGVGTCNFGGAAYVVSQPPKYGKCE | |||
| GH17 | 27 | 345 | 0 |
| IGVNYGRIADNLPAPEKVVELLKTQGINRIKLYDTETTVLTALANSGIKVVVSLPNENLASAAADQSYTDTWVQDNIKKYIPATDIEAIAVGNEVFVDPR NTTTYLVPAMKNVQSSLVKFNLDKSIKISSPIALSALASSYPPSAGSFKPELIEPVIKPMLDLLRKTSSHLMVNAYPFFAYAANADKISLDYALFKENAG NVDSGNGLKYNSLLDAQIDAVFAAMSAVGFNDVKLVVTETGWPSAGDENEIGAGSANAAAYNGGLVKRVLTGNGTPLKPKEPLNVYLFALFNENQKTGPT SERNYGLFYPNENKVYDVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 461 Download |
| MAVFVLSLLI LSSFSAIPFT YADSGMIGVN YGRIADNLPA PEKVVELLKT QGINRIKLYD 60 TETTVLTALA NSGIKVVVSL PNENLASAAA DQSYTDTWVQ DNIKKYIPAT DIEAIAVGNE 120 VFVDPRNTTT YLVPAMKNVQ SSLVKFNLDK SIKISSPIAL SALASSYPPS AGSFKPELIE 180 PVIKPMLDLL RKTSSHLMVN AYPFFAYAAN ADKISLDYAL FKENAGNVDS GNGLKYNSLL 240 DAQIDAVFAA MSAVGFNDVK LVVTETGWPS AGDENEIGAG SANAAAYNGG LVKRVLTGNG 300 TPLKPKEPLN VYLFALFNEN QKTGPTSERN YGLFYPNENK VYDVSLNGKS TPVNDNKEKV 360 VPVKPSLVGQ TWCVANGKTT KEKLQEGLDY ACGEGGADCR PIQPGATCYN PESLEAHASY 420 AFNSYYQKNA RGVGTCNFGG AAYVVSQPPK YGKCEFPTGH * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-25 | 371 | 443 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-39 | 371 | 456 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-79 | 27 | 345 | 319 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| GO:0043169 | cation binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL77689.1 | 0 | 1 | 460 | 1 | 460 | AT5g55180/MCO15_13 [Arabidopsis thaliana] |
| GenBank | AAM66024.1 | 0 | 1 | 460 | 1 | 460 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| DDBJ | BAB08587.1 | 0 | 1 | 449 | 1 | 449 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001154780.1 | 0 | 1 | 449 | 1 | 449 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_568822.1 | 0 | 1 | 460 | 1 | 460 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 0 | 27 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 27 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 0 | 27 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 27 | 347 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 27 | 347 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
