| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G55700.2 |
| Family | GH14 |
| Protein Properties | Length: 490 Molecular Weight: 55085.9 Isoelectric Point: 8.4024 |
| Chromosome | Chromosome/Scaffold: 5 Start: 22551747 End: 22554961 |
| Description | beta-amylase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 155 | 478 | 0 |
| QIGDVNKDIYYRDKSGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYLGNVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKY MMEDLMAVASQEGKPQWGSRDPPNTGCYNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQEEEKSSVMLVAKIGGIYWWY KTSSHPAELTAGYYNTSLRDGYDPVASVLSRHGAALNIPCLDMADSEIPEKYLCSPEGLRRQIHDVSKKWTIHVTGRNTSERFDEMGLRQIRENCVQPNG DTLRSFTFCRMNEKIFRVENWNNF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 490 Download |
| MTETGVIGCG CRGVTGGNFF HPGGFSLKSC FLEQSTKRNR NFFRSVSMIP PFKRGRFITK 60 LRSVAGNSRI FSMDAREKSR SFVLVSSRHK RVPVFVMMPI DTFGIDASGC PKIKRLKALT 120 VSLKALKLAG VHGIAVEEAS VFHSGSERLV LLELQIGDVN KDIYYRDKSG FSNNDYLTLG 180 VDQLPLFGGR TAVQCYEDFM LSFSTKFEPY LGNVIEEISI GLGPSGELRY PAHPSGDGRW 240 KFPGIGEFQC HDKYMMEDLM AVASQEGKPQ WGSRDPPNTG CYNSFPSGVP FFEEGNDSFL 300 SDYGRFFLEW YSGKLICHAD AILAKAADVL RRRQEEEKSS VMLVAKIGGI YWWYKTSSHP 360 AELTAGYYNT SLRDGYDPVA SVLSRHGAAL NIPCLDMADS EIPEKYLCSP EGLRRQIHDV 420 SKKWTIHVTG RNTSERFDEM GLRQIRENCV QPNGDTLRSF TFCRMNEKIF RVENWNNFVP 480 FIRQMSADM* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 3.0e-78 | 155 | 488 | 341 | + beta-amylase | ||
| PLN02801 | PLN02801 | 3.0e-109 | 92 | 488 | 449 | + beta-amylase | ||
| PLN00197 | PLN00197 | 1.0e-114 | 90 | 485 | 443 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 3.0e-127 | 34 | 486 | 505 | + beta-amylase | ||
| PLN02161 | PLN02161 | 0 | 1 | 489 | 531 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0005983 | starch catabolic process |
| GO:0009507 | chloroplast |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK76508.1 | 0 | 48 | 489 | 1 | 484 | putative beta-amylase [Arabidopsis thaliana] |
| GenBank | AAK84008.1 | 0 | 86 | 486 | 77 | 508 | AF393847_1 beta-amylase PCT-BMYI [Solanum tuberosum] |
| DDBJ | BAH20280.1 | 0 | 34 | 489 | 1 | 498 | AT5G55700 [Arabidopsis thaliana] |
| RefSeq | NP_568829.2 | 0 | 1 | 489 | 1 | 531 | BAM4 (BETA-AMYLASE 4); beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
| RefSeq | XP_002265698.1 | 0 | 1 | 489 | 1 | 522 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2dqx_A | 0 | 92 | 488 | 12 | 444 | A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean |
| PDB | 1v3i_A | 0 | 154 | 488 | 112 | 444 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1wds_A | 0 | 154 | 488 | 112 | 444 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
| PDB | 1uko_D | 0 | 154 | 488 | 112 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_C | 0 | 154 | 488 | 112 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE465458 | 241 | 202 | 442 | 0 |
| EV107336 | 225 | 266 | 490 | 0 |
| DT743582 | 283 | 203 | 485 | 0 |
| EE431359 | 223 | 249 | 471 | 0 |
| EE431359 | 15 | 244 | 258 | 4.9 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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