| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G55720.1 |
| Family | PL1 |
| Protein Properties | Length: 393 Molecular Weight: 43682 Isoelectric Point: 4.8931 |
| Chromosome | Chromosome/Scaffold: 5 Start: 22556047 End: 22557725 |
| Description | pectate lyase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 118 | 311 | 0 |
| IIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVPVKRNALSSLGGYSDGDGISIFESRDIWIDHCTLEKCYDGLID AVNGSTDITISNSYMLNHNEVMLLGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYRDWKMYAIGGSANPTIFSQGNVFIAS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 393 Download |
| MSIVCTFFLF LLNTSFAFAF AIPKPPIVRR LSTTVTSNST ASSCSANGNP IDECWRCDEN 60 WKDNRKNLAD CAVGFGRDSI GGRAGEFYTV TDSGDDNPLN PTPGTLRYAA TQDQPLWIIF 120 DRDMVIQLKQ DLQVASYKTI DGRGNNVQIA YGPCLTLYKV SNIIINNLYI HDCVPVKRNA 180 LSSLGGYSDG DGISIFESRD IWIDHCTLEK CYDGLIDAVN GSTDITISNS YMLNHNEVML 240 LGHSDEYSGD RDMRVTIAFN YFGEGLVQRM PRCRHGYFHI VNNIYRDWKM YAIGGSANPT 300 IFSQGNVFIA SNNQFTKEVT KRESADGDEE WKEWNWKSEG DEMVNGAFFT PSGKEDSPSY 360 AKFSSMVARP ASLLKTTHPS VGVLSCEIDQ AC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-28 | 129 | 308 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-55 | 129 | 308 | 202 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-74 | 123 | 312 | 201 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008150 | biological_process |
| GO:0012505 | endomembrane system |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI39737.1 | 0 | 68 | 392 | 2 | 332 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_200383.1 | 0 | 1 | 392 | 1 | 392 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002265729.1 | 0 | 2 | 392 | 3 | 402 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002317359.1 | 0 | 48 | 392 | 17 | 368 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522747.1 | 0 | 6 | 392 | 3 | 399 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 49 | 356 | 2 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 49 | 356 | 2 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-18 | 67 | 310 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 2e-17 | 127 | 312 | 71 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 9e-16 | 134 | 308 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
