| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT5G56590.1 |
| Family | CBM43 |
| Protein Properties | Length: 507 Molecular Weight: 55603.9 Isoelectric Point: 7.865 |
| Chromosome | Chromosome/Scaffold: 5 Start: 22907319 End: 22909559 |
| Description | glucan endo-1,3-beta-glucosidase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 369 | 451 | 7.1e-31 |
| WCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPSYDKC | |||
| GH17 | 26 | 346 | 0 |
| VGVCYGRSADDLPTPSKVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAESTDDPH INASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSYAYFLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLFESSSE VIDPNTGLLYKNMFDAQVDALYYALTALNFRTIKIMVTETGWPTKGSPKEKAAASSDNAETYNSNIIRHVVTNQGTPAKPGEAMNVYIFSLFNENRKAGL DSERNWGLFYPDQTSVYQLDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 507 Download |
| MARDFKLIFS ISILLLLLDC CYGGKVGVCY GRSADDLPTP SKVVQLIQQH NIKYVRIYDY 60 NSQVLKAFGN TSIELMIGVP NSDLNAFSQS QSNVDTWLKN SVLPYYPTTK ITYITVGAES 120 TDDPHINASS FVVPAMQNVL TALRKVGLSR RIKVSTTLSL GILSRSFPPS AGAFNSSYAY 180 FLRPMLEFLA ENKSPFMIDL YPYYAYRDSP NNVSLDYVLF ESSSEVIDPN TGLLYKNMFD 240 AQVDALYYAL TALNFRTIKI MVTETGWPTK GSPKEKAAAS SDNAETYNSN IIRHVVTNQG 300 TPAKPGEAMN VYIFSLFNEN RKAGLDSERN WGLFYPDQTS VYQLDFTGKS NGFHSNSSGT 360 NSSGSSNSWC IASSKASERD LKGALDWACG PGNVDCTAIQ PSQPCFQPDT LVSHASFVFN 420 SYFQQNRATD VACSFGGAGV KVNKDPSYDK CIYITAGGNK TKATNATALT SSASTPRGNE 480 LLQWILKLCL MISLFFSLQT MNSQAL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 8.0e-8 | 256 | 337 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 1.0e-15 | 376 | 440 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 8.0e-33 | 376 | 453 | 78 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-99 | 32 | 346 | 315 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005886 | plasma membrane |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009505 | plant-type cell wall |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD91576.1 | 0 | 1 | 470 | 1 | 471 | beta-1,3-glucanase [Medicago sativa] |
| GenBank | ABD91577.1 | 0 | 1 | 470 | 1 | 471 | beta-1,3-glucanase [Medicago sativa] |
| RefSeq | NP_200470.1 | 0 | 1 | 506 | 1 | 506 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002283473.1 | 0 | 1 | 496 | 1 | 493 | PREDICTED: similar to beta-1,3-glucanase [Vitis vinifera] |
| RefSeq | XP_002514201.1 | 0 | 1 | 486 | 1 | 486 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 26 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 25 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 25 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_B | 0 | 25 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_A | 0 | 25 | 347 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
