Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT5G63180.1 |
Family | PL1 |
Protein Properties | Length: 433 Molecular Weight: 47894.7 Isoelectric Point: 6.8824 |
Chromosome | Chromosome/Scaffold: 5 Start: 25340954 End: 25343119 |
Description | pectate lyase precursor, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 148 | 349 | 0 |
PLWIIFKRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSPEHYGYRTVSDGDGVSIFGGSHVWVDHCSL SNCNDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYEQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRF LA |
Full Sequence |
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Protein Sequence Length: 433 Download |
MFRPNSLLIP SNLSTTKSQR NTMLNSSYLS FALIFFCCIL FSALASSLPV SDPELVVEEV 60 HRKINESISR RKLGFFSCGS GNPIDDCWRC DKDWEKNRKR LADCGIGFGK NAIGGRDGEI 120 YVVTDPGNDD PVNPRPGTLR YAVIQDEPLW IIFKRDMTIQ LKEELIMNSF KTLDGRGASV 180 HISGGPCITI QYVTNIIIHG LHIHDCKQGG NTYVRDSPEH YGYRTVSDGD GVSIFGGSHV 240 WVDHCSLSNC NDGLIDAIRG STAITISNNY LTHHNKVMLL GHSDTYEQDK NMQVTIAFNH 300 FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI NSQGNRFLAP DDSSSKEVTK 360 HEDAPEDEWR NWNWRSEGDL LLNGAFFTYS GAGPAKSSSY SKASSLAARP SSHVGEITIA 420 SGALSCKRGS HC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-28 | 169 | 347 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-71 | 162 | 347 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-81 | 156 | 351 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0008150 | biological_process |
GO:0016829 | lyase activity |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ84042.1 | 0 | 43 | 432 | 29 | 418 | pectate lyase [Malus x domestica] |
DDBJ | BAB10560.1 | 0 | 23 | 432 | 1 | 410 | pectate lyase [Arabidopsis thaliana] |
DDBJ | BAE48664.1 | 0 | 43 | 432 | 25 | 413 | Pectate lyase [Prunus mume] |
RefSeq | NP_568967.1 | 0 | 1 | 432 | 1 | 432 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002322215.1 | 0 | 43 | 432 | 18 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 82 | 391 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 82 | 391 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 151 | 349 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.000000000000005 | 236 | 393 | 151 | 327 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.000000000000005 | 236 | 393 | 151 | 327 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |