y
Basic Information | |
---|---|
Species | Arabidopsis thaliana |
Cazyme ID | AT5G64570.1 |
Family | GH3 |
Protein Properties | Length: 785 Molecular Weight: 84308.2 Isoelectric Point: 7.7122 |
Chromosome | Chromosome/Scaffold: 5 Start: 25810115 End: 25813335 |
Description | beta-D-xylosidase, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH3 | 92 | 341 | 0 |
GVTRLGIPTYEWWSEALHGVSYIGPGTHFSSQVPGATSFPQVILTAASFNVSLFQAIGKVVSTEARAMYNVGLAGLTYWSPNVNIFRDPRWGRGQETPGE DPLLASKYASGYVKGLQETDGGDSNRLKVAACCKHYTAYDVDNWKGVERYSFNAVVTQQDMDDTYQPPFKSCVVDGNVASVMCSYNQVNGKPTCADPDLL SGVIRGEWKLNGYIVSDCDSVDVLYKNQHYTKTPAEAAAISILAGLDLNC |
Full Sequence |
---|
Protein Sequence Length: 785 Download |
MGSSSPLTRR NRAPPSSVSS VYLIFLCFFL YFLNFSNAQS SPVFACDVAA NPSLAAYGFC 60 NTVLKIEYRV ADLVARLTLQ EKIGFLVSKA NGVTRLGIPT YEWWSEALHG VSYIGPGTHF 120 SSQVPGATSF PQVILTAASF NVSLFQAIGK VVSTEARAMY NVGLAGLTYW SPNVNIFRDP 180 RWGRGQETPG EDPLLASKYA SGYVKGLQET DGGDSNRLKV AACCKHYTAY DVDNWKGVER 240 YSFNAVVTQQ DMDDTYQPPF KSCVVDGNVA SVMCSYNQVN GKPTCADPDL LSGVIRGEWK 300 LNGYIVSDCD SVDVLYKNQH YTKTPAEAAA ISILAGLDLN CGSFLGQHTE EAVKSGLVNE 360 AAIDKAISNN FLTLMRLGFF DGNPKNQIYG GLGPTDVCTS ANQELAADAA RQGIVLLKNT 420 GCLPLSPKSI KTLAVIGPNA NVTKTMIGNY EGTPCKYTTP LQGLAGTVST TYLPGCSNVA 480 CAVADVAGAT KLAATADVSV LVIGADQSIE AESRDRVDLH LPGQQQELVI QVAKAAKGPV 540 LLVIMSGGGF DITFAKNDPK IAGILWVGYP GEAGGIAIAD IIFGRYNPSG KLPMTWYPQS 600 YVEKVPMTIM NMRPDKASGY PGRTYRFYTG ETVYAFGDGL SYTKFSHTLV KAPSLVSLGL 660 EENHVCRSSE CQSLDAIGPH CENAVSGGGS AFEVHIKVRN GGDREGIHTV FLFTTPPAIH 720 GSPRKHLVGF EKIRLGKREE AVVRFKVEIC KDLSVVDEIG KRKIGLGKHL LHVGDLKHSL 780 SIRI* 840 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-48 | 414 | 643 | 238 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 1.0e-55 | 94 | 477 | 393 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 3.0e-66 | 78 | 369 | 322 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 1.0e-70 | 45 | 749 | 795 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 36 | 784 | 763 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005618 | cell wall |
GO:0005975 | carbohydrate metabolic process |
GO:0009044 | xylan 1,4-beta-xylosidase activity |
GO:0045493 | xylan catabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAE44362.1 | 0 | 1 | 784 | 1 | 780 | alpha-L-arabinofuranosidase [Raphanus sativus] |
RefSeq | NP_196535.1 | 0 | 7 | 784 | 1 | 773 | BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_201262.1 | 0 | 1 | 784 | 1 | 784 | XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
RefSeq | XP_002264183.1 | 0 | 20 | 784 | 204 | 966 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002513707.1 | 0 | 38 | 784 | 35 | 777 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 128 | 747 | 91 | 696 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3u48_A | 0 | 128 | 747 | 91 | 696 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3u4a_B | 0 | 128 | 747 | 91 | 696 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3u4a_A | 0 | 128 | 747 | 91 | 696 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 2x41_A | 3.00004e-41 | 69 | 747 | 3 | 676 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-beta-xylosidase |