Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_002_00125.1 |
Family | GH28 |
Protein Properties | Length: 1067 Molecular Weight: 117726 Isoelectric Point: 5.9724 |
Chromosome | Chromosome/Scaffold: 2 Start: 1276663 End: 1282794 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 691 | 1021 | 0 |
DKACSTPKAVFLVPEKRRYLLKPATFKGPCADKLIIQIDGTIVAPDDPKNWDPQNPRSWLRFSKLTGVSFQGAGVIDGSGGKWWDSSCKKNKSNPCIEAP TALTIQASSAVRVKGLTIQNSQQMHFVITNSDSVRILNVKISAPGTSPNTDGIHITKSTNVVIQDCKIGTGDDCISIVNGSSGIKMKNIYCGPGHGISIG SLGKDNSTGIVTKVVLDNALLKETTNGLRIKTWQGGSGYVRAVRFQNVRVENIANPIIIDQFYCDSPKSCRNQTSAVEISQIMFQNISGTTKSAEAMKFA CSDTVPCNKIVLSNINLEKEDGTAETYCNSA |
Full Sequence |
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Protein Sequence Length: 1067 Download |
NNYNEVYSNN RRINNFIKAG NFDSALQLFE EMPTHDAVSF NLMITAHGRN GYLQEGFNFY 60 KNMVSIGIKE TPFTFSSVLS ICSDLGFYQE GNQVHCRAFL LGFDLDLFVG SALVNLYMQS 120 RFISAALQLF DKLPERNVAT WNLILRGFCG LGCSDELLDF FLKMKLDGVE PNEVTLSYVI 180 HGCSVGQFLN QGKQLHCHVF KLGWVESNMF VANALVDFYS SCGSLIDARN SFECIPPEDV 240 ISWNSIIYVF ANHGLSLEAI GLFGRMQSWG KKPSIRSFVG FLNLSSETQN VRFGEQIHAS 300 VLKLGFNQFG NHVQSALIDM YGKCSKIENS VALFENIPER SIECCNSLMT SLLHCGIVED 360 VIELFGLMID EGVGLDHVTF STTLKALSLS VSASLVSCEV IHCCAIRSGF ESDIVVSCSL 420 IDAYSRSGHI KLSSQIFERI LDPNLICFTS LITGYARCGM GKEGLEMFKL LIERGLKPDQ 480 ITFLSVLTGC SHLGLVKEGL STFELMKTVY RIHPDQRHYS CMVDLLGRAG LLKEAEELLK 540 LPELKGDSVL WSSLLLSCRI HRNKEVGNRA AEALMKLQPN DPAAYVQASG FYSDIGDVET 600 SMKIREMKML MKLRKELGFM LVLSHAVGDN SIYDEMFMFE EFEELHIEEE FLEIPHWTSQ 660 HGSKVLVNVD GFGAVGDGIS DDTQAFLSAW DKACSTPKAV FLVPEKRRYL LKPATFKGPC 720 ADKLIIQIDG TIVAPDDPKN WDPQNPRSWL RFSKLTGVSF QGAGVIDGSG GKWWDSSCKK 780 NKSNPCIEAP TALTIQASSA VRVKGLTIQN SQQMHFVITN SDSVRILNVK ISAPGTSPNT 840 DGIHITKSTN VVIQDCKIGT GDDCISIVNG SSGIKMKNIY CGPGHGISIG SLGKDNSTGI 900 VTKVVLDNAL LKETTNGLRI KTWQGGSGYV RAVRFQNVRV ENIANPIIID QFYCDSPKSC 960 RNQTSAVEIS QIMFQNISGT TKSAEAMKFA CSDTVPCNKI VLSNINLEKE DGTAETYCNS 1020 ATGFGFGYVH PSADCLQSSD KDTHSDQTED VKILRPSQDD PIHTEL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-87 | 668 | 1046 | 383 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-93 | 667 | 1047 | 389 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 8.0e-101 | 694 | 1022 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-114 | 667 | 1031 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-143 | 663 | 1039 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79584.1 | 7e-22 | 2 | 334 | 245 | 579 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
GenBank | AAF79584.1 | 0 | 6 | 1060 | 46 | 1160 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
EMBL | CAN65318.1 | 0 | 1 | 1066 | 40 | 1052 | hypothetical protein [Vitis vinifera] |
EMBL | CBI28554.1 | 0 | 1 | 1066 | 40 | 1111 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002328586.1 | 0 | 4 | 618 | 57 | 671 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-24 | 762 | 982 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-18 | 659 | 1026 | 13 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 5e-18 | 765 | 993 | 80 | 318 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 2e-17 | 750 | 1007 | 63 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-17 | 750 | 1007 | 63 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT763022 | 270 | 624 | 893 | 0 |
DT763021 | 219 | 849 | 1067 | 0 |
FE686036 | 251 | 655 | 905 | 0 |
FP038137 | 219 | 741 | 959 | 0 |
EH685542 | 259 | 810 | 1067 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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