y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_002_00126.1 |
Family | GH28 |
Protein Properties | Length: 575 Molecular Weight: 61761.1 Isoelectric Point: 7.9949 |
Chromosome | Chromosome/Scaffold: 2 Start: 1289883 End: 1294269 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 182 | 527 | 0 |
AAACKVEASTITVPSQYIFLVGPISFSGPYCESNIVFQLDGMIIAPTNAKAWGSGLLQWLEFTKLRGIKIQGEGIIDGRGSVWWQDSPFGDPIDDETELV VPLTNNTTEENLNNPISNELYGKMPSTKPTALRFYGSLDVIVTGITIQNSPQCHLKFDNCIGVQVFNLNVSSPGDSLNTDGIHLQNSRDVQIHNTKLACG DDCISIQTGCSNVYIQNVNCGPGHGISIGGLGKENTKACVSNITVRDIMIHNTMNGVRIKTWQGGLGSVKNVLFLNIHVSEVEFPIVIDQYYCDKSTCKN QTSAVALSGITYANIKGTYTVKSVHLACSDSLPCVDVTLNNIELNP |
Full Sequence |
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Protein Sequence Length: 575 Download |
MKFYNPRSFI LILLVVILVW SSTLQPCNAR RGKHWRQTRL TTASLSKKTK NHHGKSHGHG 60 SKQKSPSPPP PSKAPTIPPS PSPSPPPPSK APTIPPSPSP PPPSKGPTIP PSPSPPPAPP 120 SKGPTIPPSP SPTPSKGPTI PQSPPPPAEN NGRNSTIYNV LDFGAKGDGS TDDTKAFQAA 180 WAAACKVEAS TITVPSQYIF LVGPISFSGP YCESNIVFQL DGMIIAPTNA KAWGSGLLQW 240 LEFTKLRGIK IQGEGIIDGR GSVWWQDSPF GDPIDDETEL VVPLTNNTTE ENLNNPISNE 300 LYGKMPSTKP TALRFYGSLD VIVTGITIQN SPQCHLKFDN CIGVQVFNLN VSSPGDSLNT 360 DGIHLQNSRD VQIHNTKLAC GDDCISIQTG CSNVYIQNVN CGPGHGISIG GLGKENTKAC 420 VSNITVRDIM IHNTMNGVRI KTWQGGLGSV KNVLFLNIHV SEVEFPIVID QYYCDKSTCK 480 NQTSAVALSG ITYANIKGTY TVKSVHLACS DSLPCVDVTL NNIELNPLQE RYHLYDPFCW 540 EAFGELSTPT VPPINCLQTG KPSSSRTQSD YDSC* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-63 | 148 | 525 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 3.0e-65 | 154 | 525 | 377 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-68 | 189 | 525 | 338 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-69 | 153 | 525 | 378 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-88 | 147 | 553 | 411 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN65317.1 | 0 | 189 | 574 | 4 | 388 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266600.1 | 0.0002 | 7 | 90 | 7 | 84 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266600.1 | 0 | 127 | 574 | 67 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0.0000000009 | 1 | 57 | 4 | 60 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002311773.1 | 0 | 153 | 574 | 97 | 517 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 3e-22 | 144 | 544 | 8 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 1e-19 | 166 | 525 | 19 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-18 | 308 | 525 | 98 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-18 | 308 | 525 | 98 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-18 | 308 | 525 | 98 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |