Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_002_00501.1 |
Family | PL1 |
Protein Properties | Length: 432 Molecular Weight: 48938 Isoelectric Point: 9.4067 |
Chromosome | Chromosome/Scaffold: 2 Start: 4154031 End: 4156207 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 145 | 351 | 0 |
VIQNEPLWIIFERDMTIKLNQELMVNSHKTIDARGAIVHVAYGAGITIQYSHNVIIHGLRIHDINQGSGGFIRDSLDHFGFRTVSDGDAVSVFGSSNIWL DHLSMKNCKDGLIDVVQGSTAITISNCHMTHHNDVFLFGAQDSYEPDKIMQITVAFTHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSSNPTIIS QGNRYVA |
Full Sequence |
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Protein Sequence Length: 432 Download |
MGIKINVLCV VFLAFATLAL AHIGEFDEYW QKREAEARRV ALESYHPEPE EVTNHFNQHV 60 HLALEGNGTR RGLRPYKGKC MATNPIDRCW RCRTDWATDR KRLVKCVLGF GRKTTGGLKG 120 RFYVVTDSSD NDMVNPKPGT LRHAVIQNEP LWIIFERDMT IKLNQELMVN SHKTIDARGA 180 IVHVAYGAGI TIQYSHNVII HGLRIHDINQ GSGGFIRDSL DHFGFRTVSD GDAVSVFGSS 240 NIWLDHLSMK NCKDGLIDVV QGSTAITISN CHMTHHNDVF LFGAQDSYEP DKIMQITVAF 300 THFGKGLVQR MPRCRWGFFH VVNNDYTHWL MYAIGGSSNP TIISQGNRYV APMDNKAKEA 360 THREKKTDDW MRWRWRSEGD LMKNGAFFVE SGTPLQKKPY YKDMIKAKPG AYVGRLTRFS 420 GSLTCKPNKP C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 3.0e-24 | 22 | 73 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-25 | 114 | 347 | 252 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-60 | 165 | 349 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-72 | 158 | 352 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 21 | 431 | 26 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 21 | 431 | 55 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 21 | 431 | 26 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 8 | 431 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 3 | 431 | 2 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 84 | 424 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 84 | 424 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 114 | 340 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000006 | 187 | 326 | 147 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000001 | 195 | 358 | 170 | 355 | A Chain A, Bacillus Subtilis Pectate Lyase |