Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_003_00408.1 |
Family | GH28 |
Protein Properties | Length: 473 Molecular Weight: 51245.8 Isoelectric Point: 4.4304 |
Chromosome | Chromosome/Scaffold: 3 Start: 5740984 End: 5743356 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 103 | 428 | 0 |
EACAVESAILLAPADYQFTITSTIFSGPCKPGLVFQLDGVLMPPNGPDCWPEGDSKKQWLIFYRVDNMTLTGSGTIEGNGEQWWELPCKPHRGPNGMTLP GPCDSPALIRFFISSNVEVTGLRIQNSPQFHMKFDGCTGVLIQDISIDSPALSPNTDGIHIQDTKGVGIYNSMITNGDDCVSIGPGCSEVAIENITCQHG HGISIGSLGVHHSQACVSNIYVNNVFIKNSDNGVRIKTWQGGMGSVAGIRFENVEMDNVKNCIIIDQYYCFTKGCQNETSAVYITDVSYKNIKGTYDVQT PPIHFACSDSVACTNITLSEVELLPK |
Full Sequence |
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Protein Sequence Length: 473 Download |
MEIVRWFSFI CVVIATFVLL DLSNNVDGRA HFHKKKTDHT HTKKGSPVSP SPPEYLSPAA 60 PTIPSDPYNN PNPDPCVFDV TSYGAVGDGS SDDTEAFTSA WKEACAVESA ILLAPADYQF 120 TITSTIFSGP CKPGLVFQLD GVLMPPNGPD CWPEGDSKKQ WLIFYRVDNM TLTGSGTIEG 180 NGEQWWELPC KPHRGPNGMT LPGPCDSPAL IRFFISSNVE VTGLRIQNSP QFHMKFDGCT 240 GVLIQDISID SPALSPNTDG IHIQDTKGVG IYNSMITNGD DCVSIGPGCS EVAIENITCQ 300 HGHGISIGSL GVHHSQACVS NIYVNNVFIK NSDNGVRIKT WQGGMGSVAG IRFENVEMDN 360 VKNCIIIDQY YCFTKGCQNE TSAVYITDVS YKNIKGTYDV QTPPIHFACS DSVACTNITL 420 SEVELLPKEG VLVDDPFCWN AYGILETITI PPISCLQDGE PVTLSESVNY DC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-71 | 77 | 456 | 382 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-74 | 78 | 452 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-88 | 80 | 425 | 350 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-90 | 120 | 425 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-111 | 77 | 460 | 387 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI25976.1 | 0 | 100 | 472 | 3 | 375 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_175244.1 | 0 | 4 | 472 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 19 | 472 | 17 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 472 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 472 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 9e-25 | 159 | 425 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 9e-25 | 159 | 425 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 9e-25 | 159 | 425 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 9e-25 | 159 | 425 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 9e-25 | 159 | 425 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |