y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_003_00411.1 |
Family | GH28 |
Protein Properties | Length: 465 Molecular Weight: 50259.9 Isoelectric Point: 6.3302 |
Chromosome | Chromosome/Scaffold: 3 Start: 5751047 End: 5753066 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 100 | 420 | 0 |
SVTLLLPEFHSFMIQSTIFTGPCKSNHVTFQIDGTLMPPDGPDSWPKGAKKTNWLIFYKTNGMSLQGGGVIDGKGEKWWNLPCKPHKGPNGSTLPGPCDS PALVRFFMANNLTVQGIKILNSPQFHIKFDGCKDVHINAITIKSPALSPNTDGIHIETTQNVGIYNSVVSNGDDCVSIGTGCYNVDIRNITCGPSHGISI GSLGNHNSRACVSNITVSDSIIKYSDNGLRIKTWQGGSGSVSDVTFNNVHVDTVRNPIIIDQYYCLTKSCANQTSAVFVSDIMYSNIKGTYDVRSPPIYF SCSDSIPCTNLTLSEVELLPS |
Full Sequence |
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Protein Sequence Length: 465 Download |
MEFRSLLLLV FGISVYFFCA SVQGRVHNHT KHKHGHVPIS KISIPPSPAP ESSFPRPDSP 60 SDTVFDVRSF GAVGDGIADD TQAFKMAWDT VCQGDHVSES VTLLLPEFHS FMIQSTIFTG 120 PCKSNHVTFQ IDGTLMPPDG PDSWPKGAKK TNWLIFYKTN GMSLQGGGVI DGKGEKWWNL 180 PCKPHKGPNG STLPGPCDSP ALVRFFMANN LTVQGIKILN SPQFHIKFDG CKDVHINAIT 240 IKSPALSPNT DGIHIETTQN VGIYNSVVSN GDDCVSIGTG CYNVDIRNIT CGPSHGISIG 300 SLGNHNSRAC VSNITVSDSI IKYSDNGLRI KTWQGGSGSV SDVTFNNVHV DTVRNPIIID 360 QYYCLTKSCA NQTSAVFVSD IMYSNIKGTY DVRSPPIYFS CSDSIPCTNL TLSEVELLPS 420 NGDILSDPVC WSAYGTLATL TIPPVFCLQE GLPESIITSD IDRC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-81 | 61 | 449 | 394 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-82 | 1 | 444 | 449 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-89 | 116 | 417 | 303 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-96 | 61 | 417 | 360 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-118 | 61 | 444 | 387 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 61 | 464 | 85 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 1 | 464 | 1 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 1 | 463 | 1 | 471 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 61 | 464 | 39 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 7 | 464 | 3 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-28 | 162 | 417 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-28 | 162 | 417 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-28 | 162 | 417 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-28 | 162 | 417 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-28 | 162 | 417 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |