Basic Information | |
---|---|
Species | Aquilegia coerulea |
Cazyme ID | Aquca_005_00082.1 |
Family | GH28 |
Protein Properties | Length: 374 Molecular Weight: 39332 Isoelectric Point: 8.9784 |
Chromosome | Chromosome/Scaffold: 5 Start: 844942 End: 846525 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 24 | 355 | 0 |
WRQACGATAKSTVLIPAGQYLAAIPVIMKGPCKNRVTFQLDGTVKAPADMSNQDDWIVFKYVNGLTVLGKGALDGQGSLAWSQNQCSKRENGGKCKFPIN LRFDFVTDATVSDISSIASKKVHVNIFGCKNIKINNIKISAPATAPNTDGIHIAESSGVEISHANIATGDDCVSIITGSTNIKITGVSCGPGHGISIGSM GRARKEETVTGVLVKTCTFTGTENGVRIKTWPGGSGGTASNLIFDDLIMNNVKNPIVIDQEYCPYNACNKQVPSRIKISKVAFRNIRGTSATKEAVTLKC GMPCEGVELSNINLEYTGRDGPATSICTNLKP |
Full Sequence |
---|
Protein Sequence Length: 374 Download |
FNVKTLGAKG DGKTDDAKAI LSAWRQACGA TAKSTVLIPA GQYLAAIPVI MKGPCKNRVT 60 FQLDGTVKAP ADMSNQDDWI VFKYVNGLTV LGKGALDGQG SLAWSQNQCS KRENGGKCKF 120 PINLRFDFVT DATVSDISSI ASKKVHVNIF GCKNIKINNI KISAPATAPN TDGIHIAESS 180 GVEISHANIA TGDDCVSIIT GSTNIKITGV SCGPGHGISI GSMGRARKEE TVTGVLVKTC 240 TFTGTENGVR IKTWPGGSGG TASNLIFDDL IMNNVKNPIV IDQEYCPYNA CNKQVPSRIK 300 ISKVAFRNIR GTSATKEAVT LKCGMPCEGV ELSNINLEYT GRDGPATSIC TNLKPAIAKN 360 IFPPTCNTPT SAN* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 9.0e-85 | 2 | 367 | 374 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-88 | 1 | 366 | 375 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-95 | 1 | 366 | 375 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-102 | 28 | 354 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-128 | 1 | 366 | 375 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABY21306.1 | 0 | 1 | 363 | 11 | 373 | pollen allergen Pla o 2 [Platanus orientalis] |
Swiss-Prot | Q6H9K0 | 0 | 1 | 363 | 10 | 372 | PGLR2_PLAAC RecName: Full=Exopolygalacturonase; AltName: Full=Pollen allergen Pla a 2; AltName: Allergen=Pla a 2; Flags: Precursor |
RefSeq | XP_002282563.1 | 0 | 1 | 366 | 28 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 1 | 366 | 28 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282594.1 | 0 | 1 | 366 | 28 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-19 | 88 | 312 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-19 | 88 | 312 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-19 | 88 | 312 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-19 | 88 | 312 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-19 | 88 | 312 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DT741125 | 261 | 106 | 366 | 0 |
DT741126 | 238 | 1 | 238 | 0 |
GR462194 | 282 | 73 | 350 | 0 |
EY196848 | 266 | 96 | 358 | 0 |
EX164190 | 266 | 96 | 358 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|