Basic Information | |
---|---|
Species | Aquilegia coerulea |
Cazyme ID | Aquca_005_00511.1 |
Family | GH28 |
Protein Properties | Length: 383 Molecular Weight: 40917.8 Isoelectric Point: 5.5237 |
Chromosome | Chromosome/Scaffold: 5 Start: 6044842 End: 6047215 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 38 | 369 | 0 |
AKACGSSSPIVLNVPSNMSFLLNHITFQGPCKPTSITIQILGTILAPNEISAWKSDDKEHWMTFDSINSLTLNGSGQINGQGSSWWECREKNKCSEAPNA VAINNCNNTRINDLNFVDSPMMHIALNDCFGANISGITIMAPKDSPNTDGIHLEGTKQVRITNSTIGTGDDCISIGTQSSNINISHIFCGPGHGISVGSL GKDEESAVEEIFVSNCNFSDTMNGVRIKTWQGGSGFAKSIRFEHIVINSTDNPIIIDQYYCNDGHNCPNKTSAVKLSDVSFRDINGTSSKETAINLACSE TVACTGIHLEHVHLTSATKSKQAASACKNAKG |
Full Sequence |
---|
Protein Sequence Length: 383 Download |
FSLLPNNTSP TTFLNVMDYG AVGNGKTDDT QAFSKAWAKA CGSSSPIVLN VPSNMSFLLN 60 HITFQGPCKP TSITIQILGT ILAPNEISAW KSDDKEHWMT FDSINSLTLN GSGQINGQGS 120 SWWECREKNK CSEAPNAVAI NNCNNTRIND LNFVDSPMMH IALNDCFGAN ISGITIMAPK 180 DSPNTDGIHL EGTKQVRITN STIGTGDDCI SIGTQSSNIN ISHIFCGPGH GISVGSLGKD 240 EESAVEEIFV SNCNFSDTMN GVRIKTWQGG SGFAKSIRFE HIVINSTDNP IIIDQYYCND 300 GHNCPNKTSA VKLSDVSFRD INGTSSKETA INLACSETVA CTGIHLEHVH LTSATKSKQA 360 ASACKNAKGM SLDVIPPVEC LD* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-92 | 9 | 351 | 350 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 4.0e-93 | 9 | 368 | 367 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 4.0e-97 | 15 | 373 | 361 | + polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-100 | 14 | 382 | 374 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 1.0e-114 | 4 | 381 | 389 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36306.1 | 0 | 11 | 381 | 121 | 493 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36306.1 | 0.0002 | 309 | 378 | 22 | 90 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 11 | 381 | 15 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266960.1 | 0 | 14 | 381 | 20 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002515526.1 | 0 | 12 | 381 | 26 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-28 | 111 | 353 | 115 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 7e-20 | 106 | 337 | 71 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-20 | 106 | 337 | 71 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-20 | 106 | 337 | 71 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-20 | 106 | 337 | 71 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DR923380 | 239 | 31 | 269 | 0 |
DT731103 | 219 | 165 | 383 | 0 |
DR923379 | 218 | 166 | 383 | 0 |
DR923380 | 31 | 265 | 295 | 0.0000000004 |
DR923380 | 12 | 296 | 307 | 0.0000000004 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|