Basic Information | |
---|---|
Species | Aquilegia coerulea |
Cazyme ID | Aquca_007_00950.1 |
Family | GH28 |
Protein Properties | Length: 421 Molecular Weight: 43843.1 Isoelectric Point: 6.0733 |
Chromosome | Chromosome/Scaffold: 7 Start: 7177975 End: 7179874 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 74 | 408 | 0 |
AWQAACNSTGSPKVVIPTGTYLTGPVQFFGPCKGVTTITVQLEGTLKASTNLEQYENHDWIQFSWVNGLILTGGGTFDGQGAVAWPYNKCPANKKCNVLP TSLKFNAMNGTIVSGITSLNSKFFHYGLIDCQNFNASGLHITAPEDSPNTDGMHIERSSGVTIADSTIGTGDDCISIGHSNSHVTITGINCGPGHGISVG SLGKYQNEGDVNGLIVRNCTMTGTQNGVRIKTWENSPGASAATNMTFEDIVMNNVGNPIIIDQTYCPFASCEGNAPSQVKLQDISFKNIRGTSSTPVAVT LECSQGIPCQNVILEDINLQHSAGATATCQNVQAK |
Full Sequence |
---|
Protein Sequence Length: 421 Download |
MKVGIFFIIC FNAIFIGGNS QNSTRSTTQD NSTGGTPAGG AATPAGSGTG TFNVKDFGTK 60 GDGTSDDSKA IQAAWQAACN STGSPKVVIP TGTYLTGPVQ FFGPCKGVTT ITVQLEGTLK 120 ASTNLEQYEN HDWIQFSWVN GLILTGGGTF DGQGAVAWPY NKCPANKKCN VLPTSLKFNA 180 MNGTIVSGIT SLNSKFFHYG LIDCQNFNAS GLHITAPEDS PNTDGMHIER SSGVTIADST 240 IGTGDDCISI GHSNSHVTIT GINCGPGHGI SVGSLGKYQN EGDVNGLIVR NCTMTGTQNG 300 VRIKTWENSP GASAATNMTF EDIVMNNVGN PIIIDQTYCP FASCEGNAPS QVKLQDISFK 360 NIRGTSSTPV AVTLECSQGI PCQNVILEDI NLQHSAGATA TCQNVQAKYL GTVVPPPCKV 420 * |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 4.0e-88 | 52 | 418 | 370 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-90 | 53 | 415 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-97 | 52 | 418 | 374 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-103 | 79 | 405 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 52 | 418 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ62998.1 | 0 | 39 | 419 | 16 | 399 | oil palm polygalacturonase allergen PEST459 [Elaeis guineensis] |
EMBL | CAA16789.1 | 0 | 70 | 418 | 1 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_193552.1 | 0 | 53 | 418 | 36 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 42 | 418 | 43 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 6 | 418 | 8 | 409 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-21 | 144 | 408 | 113 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000000003 | 222 | 405 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000003 | 222 | 405 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000003 | 222 | 405 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000000003 | 222 | 405 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |