Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_010_00069.1 |
Family | PL4 |
Protein Properties | Length: 712 Molecular Weight: 80468.2 Isoelectric Point: 4.7703 |
Chromosome | Chromosome/Scaffold: 10 Start: 477795 End: 487266 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 74 | 693 | 0 |
MSVTLQIQDSHVIMDNGILQVTLSNPGGLVTGIRFNGIDNLLEVRNEENNRGYWDLVWAEPGSTGTKGTFDLIQGTSFKVIVEDEDQVEISFTRSWEPSL QGKQVPLNTDIRFIMLRGCSGFYSYGIYEHLQDWPGFNMPNTRIAFKLNKDKFQYMAMADNRQRIMPMPDDRLQGHCQPLAYPEAVLLTNPINPDLKGEV DDKYQYSCESKDNRVHGWICTNPPVGLWQITPSSEFRTGGPVKQILTSHVGPTTLAMFVSAHYSGEDLVPKIQDKEPWKKVFGPVFIYLNWAMESDDPLS LWEDAKAQMAIEVESWPYSFPASEDFPTTDERGSVSGTLLVKDPYIDEDYMSADSAYIGLALPGDAGSWQRESKGYQFWTRTDEDGNFTISDIRAGNYNL YAWVPGFIGDYKYDVDISITPGCDIDLGGIVYEPPRDGPTLWEIGIPDRSAAEFFVPDPDPKYINKVLVNKPDLRFRQYGLWDRYAELYPNTDLVYTVGV SDFRKDWFFAQVNRKKDSKTYQGTTWQIVFNLDEVDQSGTFKLRLALASATVAELQVRVNDPKANPPLFSSGVIGKDNSLARHGIHGLYWLYTVDVPGSL LVKGNNTIFLTQPRAATPWQ |
Full Sequence |
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Protein Sequence Length: 712 Download |
MFWSLTKLST NLCFSILFFL FLSISIPYIV LCYFISNARL VSKMVLQQSL TLMQEKKHGI 60 GIESSKAKTP MSSMSVTLQI QDSHVIMDNG ILQVTLSNPG GLVTGIRFNG IDNLLEVRNE 120 ENNRGYWDLV WAEPGSTGTK GTFDLIQGTS FKVIVEDEDQ VEISFTRSWE PSLQGKQVPL 180 NTDIRFIMLR GCSGFYSYGI YEHLQDWPGF NMPNTRIAFK LNKDKFQYMA MADNRQRIMP 240 MPDDRLQGHC QPLAYPEAVL LTNPINPDLK GEVDDKYQYS CESKDNRVHG WICTNPPVGL 300 WQITPSSEFR TGGPVKQILT SHVGPTTLAM FVSAHYSGED LVPKIQDKEP WKKVFGPVFI 360 YLNWAMESDD PLSLWEDAKA QMAIEVESWP YSFPASEDFP TTDERGSVSG TLLVKDPYID 420 EDYMSADSAY IGLALPGDAG SWQRESKGYQ FWTRTDEDGN FTISDIRAGN YNLYAWVPGF 480 IGDYKYDVDI SITPGCDIDL GGIVYEPPRD GPTLWEIGIP DRSAAEFFVP DPDPKYINKV 540 LVNKPDLRFR QYGLWDRYAE LYPNTDLVYT VGVSDFRKDW FFAQVNRKKD SKTYQGTTWQ 600 IVFNLDEVDQ SGTFKLRLAL ASATVAELQV RVNDPKANPP LFSSGVIGKD NSLARHGIHG 660 LYWLYTVDVP GSLLVKGNNT IFLTQPRAAT PWQNIMYDYI RLEAPPPSPS K* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0008 | 443 | 480 | 38 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 3.0e-34 | 404 | 503 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-56 | 515 | 703 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 7.0e-69 | 81 | 374 | 297 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 4.0e-91 | 65 | 273 | 209 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 71 | 706 | 1 | 645 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 87 | 706 | 1 | 616 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 87 | 704 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301114.1 | 0 | 71 | 711 | 1 | 637 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 71 | 711 | 1 | 640 | lyase, putative [Ricinus communis] |