Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_010_00069.2 |
Family | PL4 |
Protein Properties | Length: 642 Molecular Weight: 72508.6 Isoelectric Point: 4.504 |
Chromosome | Chromosome/Scaffold: 10 Start: 483317 End: 487830 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 6 | 623 | 0 |
VTLQIQDTHVMMDNGLLQVTLSNPGGLVTGIRFNGIDNVLEVQNEEGNRGYWDLVWADPGSAGTKGIFDVIQGTSFNVIVEDEDQVEISFTRSWNPSLQG KQVPLNIDKRFIMLRGCSGFYSYGIYEHLQDWPGFNMAETRIAFKLRKDKFQYMAMADDRQRIMPMPDDRLQGRCQPLAYPEAVLLTKPINSDLKGEVDD KYQYSCDDKDNKVHGWICTDPRVGFWQITPSDEFRTGGPVKQNLTSHVGPTTLAMFVSAHYSGEDLVPKIQDKEPWKKVFGPVFIYLNWAMESDDPLSLW EDAKAQMAIEVESWPYSFPASEDFPTTDERGSVSGTLLVKDPYIDEDYMSADSAYIGLALPGDAGSWQRESKGYQFWTRTDEDGNFTISDIRAGNYNLYA WVPGFIGDYKYDVDISITPGCDIDLGGIVYEPPRDGPTLWEIGIPDRSAAEFFVPDPDPKYINKVLVNKPDLRFRQYGLWDRYAELYPNTDLVYTVGVSD FRKDWFFAQVNRKKDSKTYQGTTWQIVFNLDEVDQSGTFKLRLALASATVAELQVRVNDPKANPPLFSSGVIGKDNSLARHGIHGLYWLYTVDVPGSLLV KGNNTIFLTQPRAATPWQ |
Full Sequence |
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Protein Sequence Length: 642 Download |
MSPMGVTLQI QDTHVMMDNG LLQVTLSNPG GLVTGIRFNG IDNVLEVQNE EGNRGYWDLV 60 WADPGSAGTK GIFDVIQGTS FNVIVEDEDQ VEISFTRSWN PSLQGKQVPL NIDKRFIMLR 120 GCSGFYSYGI YEHLQDWPGF NMAETRIAFK LRKDKFQYMA MADDRQRIMP MPDDRLQGRC 180 QPLAYPEAVL LTKPINSDLK GEVDDKYQYS CDDKDNKVHG WICTDPRVGF WQITPSDEFR 240 TGGPVKQNLT SHVGPTTLAM FVSAHYSGED LVPKIQDKEP WKKVFGPVFI YLNWAMESDD 300 PLSLWEDAKA QMAIEVESWP YSFPASEDFP TTDERGSVSG TLLVKDPYID EDYMSADSAY 360 IGLALPGDAG SWQRESKGYQ FWTRTDEDGN FTISDIRAGN YNLYAWVPGF IGDYKYDVDI 420 SITPGCDIDL GGIVYEPPRD GPTLWEIGIP DRSAAEFFVP DPDPKYINKV LVNKPDLRFR 480 QYGLWDRYAE LYPNTDLVYT VGVSDFRKDW FFAQVNRKKD SKTYQGTTWQ IVFNLDEVDQ 540 SGTFKLRLAL ASATVAELQV RVNDPKANPP LFSSGVIGKD NSLARHGIHG LYWLYTVDVP 600 GSLLVKGNNT IFLTQPRAAT PWQNIMYDYI RLEAPPPSPS K* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0008 | 373 | 410 | 38 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 6.0e-34 | 334 | 433 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 5.0e-56 | 445 | 633 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 5.0e-74 | 11 | 304 | 297 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-101 | 1 | 203 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 636 | 1 | 645 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 636 | 1 | 616 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 634 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 641 | 1 | 640 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 640 | 1 | 639 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT729214 | 263 | 71 | 333 | 0 |
DW479599 | 293 | 1 | 293 | 0 |
DW479600 | 293 | 1 | 293 | 0 |
GW864372 | 311 | 147 | 457 | 0 |
DT729214 | 32 | 335 | 366 | 0.00001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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