Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_010_00069.3 |
Family | PL4 |
Protein Properties | Length: 636 Molecular Weight: 71896 Isoelectric Point: 4.5173 |
Chromosome | Chromosome/Scaffold: 10 Start: 479029 End: 487266 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 8 | 617 | 0 |
QVIMDNGILQVTLSNPGGLVTGIRFNGIDNLLEVRNEENNRGYWDLVWAEPGSTGTKGTFDLIQGTSFKVIVEDEDQVEISFTRSWEPSLQGKQVPLNTD IRFIMLRGCSGFYSYGIYEHLQDWPGFNMPNTRIAFKLNKDKFQYMAMADNRQRIMPMPDDRLQGHCQPLAYPEAVLLTNPINPDLKGEVDDKYQYSCES KDNRVHGWICTNPPVGLWQITPSSEFRTGGPVKQILTSHVGPTTLAMFVSAHYSGEDLVPKIQDKEPWKKVFGPVFIYLNWAMESDDPLSLWEDAKAQMA IEVESWPYSFPASEDFPTTDERGSVSGTLLVKDPYIDEDYMSADSAYIGLALPGDAGSWQRESKGYQFWTRTDEDGNFTISDIRAGNYNLYAWVPGFIGD YKYDVDISITPGCDIDLGGIVYEPPRDGPTLWEIGIPDRSAAEFFVPDPDPKYINKVLVNKPDLRFRQYGLWDRYAELYPNTDLVYTVGVSDFRKDWFFA QVNRKKDSKTYQGTTWQIVFNLDEVDQSGTFKLRLALASATVAELQVRVNDPKANPPLFSSGVIGKDNSLARHGIHGLYWLYTVDVPGSLLVKGNNTIFL TQPRAATPWQ |
Full Sequence |
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Protein Sequence Length: 636 Download |
MIEILSFQVI MDNGILQVTL SNPGGLVTGI RFNGIDNLLE VRNEENNRGY WDLVWAEPGS 60 TGTKGTFDLI QGTSFKVIVE DEDQVEISFT RSWEPSLQGK QVPLNTDIRF IMLRGCSGFY 120 SYGIYEHLQD WPGFNMPNTR IAFKLNKDKF QYMAMADNRQ RIMPMPDDRL QGHCQPLAYP 180 EAVLLTNPIN PDLKGEVDDK YQYSCESKDN RVHGWICTNP PVGLWQITPS SEFRTGGPVK 240 QILTSHVGPT TLAMFVSAHY SGEDLVPKIQ DKEPWKKVFG PVFIYLNWAM ESDDPLSLWE 300 DAKAQMAIEV ESWPYSFPAS EDFPTTDERG SVSGTLLVKD PYIDEDYMSA DSAYIGLALP 360 GDAGSWQRES KGYQFWTRTD EDGNFTISDI RAGNYNLYAW VPGFIGDYKY DVDISITPGC 420 DIDLGGIVYE PPRDGPTLWE IGIPDRSAAE FFVPDPDPKY INKVLVNKPD LRFRQYGLWD 480 RYAELYPNTD LVYTVGVSDF RKDWFFAQVN RKKDSKTYQG TTWQIVFNLD EVDQSGTFKL 540 RLALASATVA ELQVRVNDPK ANPPLFSSGV IGKDNSLARH GIHGLYWLYT VDVPGSLLVK 600 GNNTIFLTQP RAATPWQNIM YDYIRLEAPP PSPSK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0008 | 367 | 404 | 38 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 5.0e-34 | 328 | 427 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 6.0e-56 | 439 | 627 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-68 | 6 | 298 | 296 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-90 | 8 | 197 | 190 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 8 | 630 | 14 | 645 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 11 | 630 | 1 | 616 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 11 | 628 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 2 | 632 | 8 | 636 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 2 | 634 | 8 | 639 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT729214 | 263 | 65 | 327 | 0 |
GW864372 | 311 | 141 | 451 | 0 |
DR937930 | 227 | 404 | 630 | 0 |
DT552229 | 293 | 11 | 302 | 0 |
DT729214 | 32 | 329 | 360 | 0.00001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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