y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_010_00071.1 |
Family | PL4 |
Protein Properties | Length: 645 Molecular Weight: 73061.9 Isoelectric Point: 4.5474 |
Chromosome | Chromosome/Scaffold: 10 Start: 488564 End: 492602 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 6 | 622 | 0 |
GVTLQIQDSHVMMDNGLVQVTLSNPGGLVTSIGFNGIDNLLEVQNEEGNRGYWDLVWAAPGSTGTTGTFDRIQGTSFKVIVEDEDQVEISFTRSWDPSLQ GKQEPLNIDRRFVMLRGSSGFYSYGIYEHLQDWPGFNMPETRIVFNLRKDKFQYMAMADDRQRPMPMPDDRLPGRCQPLAYPEAVLLTNPINPDFKGEVD DKYQYSCENKDNRVHGWICTDPPVGFWQITPSNEFRTGGPVKQDLTSHVGPFALAMFVSAHYSGEDLVVKFKDNEPWKKVFGPVFMYINQAMDNDNPLSL WEDAKDQMAIEVGSWPYNFPASDDYPTSDERGSISGTLLVKDLYIKEEYMSADSAYIGLALPGDAGSWQRESKGYQFWTKADKDGNFTISDIRAGEYNLY AWVPGFIGDYKYNVDINISSGCDIDLGEIVYEPPRDGPTLWEIGIPDRSAAEFFVPVPDPKYINKLLVNKPDMRFRQYGLWDRYAELYPDTDLVYTVGVS DYRKHWFFAQVNRNKDSKTYGGTTWQVVFKLDEVHQSSTFKFRLALASANDAELQVQVNDPQANPPLFTSGVIGKDNAIQRHGIHGLYRLYSVDIPGSLL VRGNNTIFLSQIRSTTP |
Full Sequence |
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Protein Sequence Length: 645 Download |
MMSPNGVTLQ IQDSHVMMDN GLVQVTLSNP GGLVTSIGFN GIDNLLEVQN EEGNRGYWDL 60 VWAAPGSTGT TGTFDRIQGT SFKVIVEDED QVEISFTRSW DPSLQGKQEP LNIDRRFVML 120 RGSSGFYSYG IYEHLQDWPG FNMPETRIVF NLRKDKFQYM AMADDRQRPM PMPDDRLPGR 180 CQPLAYPEAV LLTNPINPDF KGEVDDKYQY SCENKDNRVH GWICTDPPVG FWQITPSNEF 240 RTGGPVKQDL TSHVGPFALA MFVSAHYSGE DLVVKFKDNE PWKKVFGPVF MYINQAMDND 300 NPLSLWEDAK DQMAIEVGSW PYNFPASDDY PTSDERGSIS GTLLVKDLYI KEEYMSADSA 360 YIGLALPGDA GSWQRESKGY QFWTKADKDG NFTISDIRAG EYNLYAWVPG FIGDYKYNVD 420 INISSGCDID LGEIVYEPPR DGPTLWEIGI PDRSAAEFFV PVPDPKYINK LLVNKPDMRF 480 RQYGLWDRYA ELYPDTDLVY TVGVSDYRKH WFFAQVNRNK DSKTYGGTTW QVVFKLDEVH 540 QSSTFKFRLA LASANDAELQ VQVNDPQANP PLFTSGVIGK DNAIQRHGIH GLYRLYSVDI 600 PGSLLVRGNN TIFLSQIRST TPWQNIMYDY IRLEGPPPPT SNQN* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 1.0e-31 | 335 | 434 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-50 | 446 | 634 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-70 | 12 | 305 | 297 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-83 | 2 | 204 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 2 | 644 | 1 | 652 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 18 | 644 | 1 | 623 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301114.1 | 0 | 2 | 644 | 1 | 639 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 2 | 643 | 1 | 640 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 2 | 641 | 1 | 639 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT729214 | 263 | 72 | 334 | 0 |
DY293973 | 332 | 2 | 330 | 0 |
DW479599 | 293 | 2 | 294 | 0 |
DW479600 | 297 | 2 | 298 | 0 |
DT729214 | 32 | 336 | 367 | 0.000007 |
Sequence Alignments (This image is cropped. Click for full image.) |
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