y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_012_00088.1 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 44201 Isoelectric Point: 8.2656 |
Chromosome | Chromosome/Scaffold: 12 Start: 2735234 End: 2736787 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 390 | 0 |
TDACAWNGGGTVLIPKGNYLVGPTTFKGPCKGPIDFQIQGVVNAPSDLSKFKDYSYDWIRFQYVNGLYVGGGGTFHGHGSSAWSHNDCNKNKNCRFLPIS IRFDFINYGTVEGIYSVDSKSFHINIFNCNNMKFNYITITAPEDSPNTDGIHIGDSSFISISHSNIGTGDDCISFGAGSNNIHVTNVTCGPGHGISVGSL GKIPKEGNVVGLIVRNCTFIGTSNGVRIKTWGTSNTNFVYNITFEDIFMNNVYNPIFIDQEYCPNSSCNDQTPSKVLIKDVHYRNIWGTSSSKVAVNFVC SRSLPCQKIEVKDIYLPYNGNDGQASANCLNVRG |
Full Sequence |
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Protein Sequence Length: 403 Download |
MESSRLVTVL LQNFSIFFLF TCVVKARPYT NVFNVLKYGA VADGKTDCSK AFWTAWTDAC 60 AWNGGGTVLI PKGNYLVGPT TFKGPCKGPI DFQIQGVVNA PSDLSKFKDY SYDWIRFQYV 120 NGLYVGGGGT FHGHGSSAWS HNDCNKNKNC RFLPISIRFD FINYGTVEGI YSVDSKSFHI 180 NIFNCNNMKF NYITITAPED SPNTDGIHIG DSSFISISHS NIGTGDDCIS FGAGSNNIHV 240 TNVTCGPGHG ISVGSLGKIP KEGNVVGLIV RNCTFIGTSN GVRIKTWGTS NTNFVYNITF 300 EDIFMNNVYN PIFIDQEYCP NSSCNDQTPS KVLIKDVHYR NIWGTSSSKV AVNFVCSRSL 360 PCQKIEVKDI YLPYNGNDGQ ASANCLNVRG YTVGKQLPKI RL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 8.0e-81 | 13 | 390 | 386 | + Probable polygalacturonase At3g15720 | ||
PLN02155 | PLN02155 | 1.0e-84 | 16 | 398 | 384 | + polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-85 | 34 | 399 | 371 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-95 | 67 | 388 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-135 | 30 | 399 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI28394.1 | 0 | 33 | 399 | 26 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273500.1 | 0 | 33 | 399 | 26 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002274125.1 | 0 | 32 | 400 | 27 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282563.1 | 0 | 32 | 400 | 27 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 32 | 400 | 27 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 0.000000000000002 | 30 | 372 | 18 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 0.00000000000006 | 122 | 337 | 112 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000002 | 107 | 388 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000002 | 107 | 388 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000002 | 107 | 388 | 55 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |