Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_014_00345.1 |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 41845 Isoelectric Point: 9.8628 |
Chromosome | Chromosome/Scaffold: 14 Start: 1906685 End: 1908139 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 377 | 0 |
NLACSKTQSVKIYVPNGRYLLKQITFKGPCKNNVTSFQIDGTLVAPSYKVLGNAPNWILFYKVTGLSISGGTLDAQGASFWACRRSGKSCPPGARSLAFN FGTKITVKGLTSINSQIMHISINNCNNLLMQGLKIVAPDDSPNTDGIHIQLSTGVTITGASIKTGDDCVSIGPGTRNLWIEASNCGPGHGISIGSLGQDK LEQGVQNITVKNVVFTGSNNGLRIKTWARPSNGFVRGVLYQDIIMKNVVNPILIDQHYCPRNKGCPSQESGIKISQVTYRNIQGSSASQVAMKFDCSRTN PCTDIKLQTVKLTYQNTAAKSTCLNAKG |
Full Sequence |
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Protein Sequence Length: 390 Download |
MEKSKITLFV FLLFSFWVSA NAVYNINVVD YGAKTDGKTD STKAFLTAWN LACSKTQSVK 60 IYVPNGRYLL KQITFKGPCK NNVTSFQIDG TLVAPSYKVL GNAPNWILFY KVTGLSISGG 120 TLDAQGASFW ACRRSGKSCP PGARSLAFNF GTKITVKGLT SINSQIMHIS INNCNNLLMQ 180 GLKIVAPDDS PNTDGIHIQL STGVTITGAS IKTGDDCVSI GPGTRNLWIE ASNCGPGHGI 240 SIGSLGQDKL EQGVQNITVK NVVFTGSNNG LRIKTWARPS NGFVRGVLYQ DIIMKNVVNP 300 ILIDQHYCPR NKGCPSQESG IKISQVTYRN IQGSSASQVA MKFDCSRTNP CTDIKLQTVK 360 LTYQNTAAKS TCLNAKGAST GSVLPQSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-89 | 26 | 386 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-93 | 28 | 389 | 372 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-93 | 53 | 376 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-101 | 21 | 388 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-154 | 27 | 389 | 365 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD33834.1 | 0 | 8 | 389 | 13 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
RefSeq | NP_181917.1 | 0 | 1 | 389 | 1 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002275740.1 | 0 | 6 | 389 | 10 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331634.1 | 0 | 4 | 389 | 7 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529091.1 | 0 | 8 | 389 | 9 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 4e-23 | 118 | 362 | 76 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-23 | 118 | 362 | 76 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-23 | 118 | 362 | 76 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-23 | 118 | 362 | 76 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 4e-23 | 118 | 362 | 76 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |