Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_014_00381.1 |
Family | GH28 |
Protein Properties | Length: 489 Molecular Weight: 53458.4 Isoelectric Point: 8.7761 |
Chromosome | Chromosome/Scaffold: 14 Start: 2063288 End: 2065915 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 117 | 459 | 0 |
DKGGSQLNVPKGKWVTGSFNLTSNFTLFLEFGAVILGSQNSEEWPIIEPLPSYGRGRERLGGRHISLIHGDGLTDVVITGENGTIDGQGKMWWNLWWNRT LEHTRGHLVELMNSHNILISNLTFLNSPFWTIHPVYCSNVVIKEMTILAPLNAPNTDGIDPDSSTNVCIENCYIESGDDLVAVKSGWDQYGMKMARPSSN IIVRNVSGTTPTCSGVGIGSEMSGGIFNVLIEDLHIHNSAAGVRIKTDIGRGGYISNITIANITMDRVKIPIRFSRGSNDHPDEGWDLMALPSVKGIHIS NIISKNTGKAPVLTGIKEAPFEGICMENITLFGLSPSAKWQCE |
Full Sequence |
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Protein Sequence Length: 489 Download |
MDTDKPFLNT NLGNFKRPSR TVFILIITVL TVTLLQISTK SVFPIWAILG KKFKIDGFTV 60 SSEESLRSCS GFYNKGVMKR RRVMVMSIKD FGGVGDGKTS NTLAFRKAIQ SLKRFGDKGG 120 SQLNVPKGKW VTGSFNLTSN FTLFLEFGAV ILGSQNSEEW PIIEPLPSYG RGRERLGGRH 180 ISLIHGDGLT DVVITGENGT IDGQGKMWWN LWWNRTLEHT RGHLVELMNS HNILISNLTF 240 LNSPFWTIHP VYCSNVVIKE MTILAPLNAP NTDGIDPDSS TNVCIENCYI ESGDDLVAVK 300 SGWDQYGMKM ARPSSNIIVR NVSGTTPTCS GVGIGSEMSG GIFNVLIEDL HIHNSAAGVR 360 IKTDIGRGGY ISNITIANIT MDRVKIPIRF SRGSNDHPDE GWDLMALPSV KGIHISNIIS 420 KNTGKAPVLT GIKEAPFEGI CMENITLFGL SPSAKWQCEF ISGMTVGVSP LPCPQLNANN 480 SSYPCKHS* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03010 | PLN03010 | 3.0e-20 | 91 | 388 | 315 | + polygalacturonase |
PLN02218 | PLN02218 | 3.0e-25 | 81 | 455 | 389 | + polygalacturonase ADPG |
PLN03003 | PLN03003 | 2.0e-26 | 86 | 388 | 315 | + Probable polygalacturonase At3g15720 |
pfam00295 | Glyco_hydro_28 | 3.0e-31 | 184 | 461 | 292 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
COG5434 | PGU1 | 2.0e-60 | 85 | 439 | 394 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 12 | 482 | 1 | 462 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 1 | 485 | 1 | 476 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 1 | 485 | 1 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310517.1 | 0 | 62 | 488 | 14 | 437 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 40 | 488 | 36 | 480 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5.99994e-41 | 86 | 454 | 28 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5.99994e-41 | 86 | 454 | 28 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5.99994e-41 | 86 | 454 | 28 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5.99994e-41 | 86 | 454 | 28 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-22 | 130 | 461 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |