y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_014_00768.1 |
Family | GH28 |
Protein Properties | Length: 469 Molecular Weight: 51347.8 Isoelectric Point: 4.9843 |
Chromosome | Chromosome/Scaffold: 14 Start: 4518021 End: 4522046 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 111 | 444 | 0 |
NEACASEGPVLFVIPENKTYLLTPIRFTGPCRSDDLTVQIAGTIEASDNRSDYQNSRGRWLLFENIENLIVEGDGTIDGKGEIWWKNSCKINKTLPCKSA PTALTFYKCTNLRVRNIRIKNAQQMHLIFQKCVNVQAMNLMVTAPGKSPNTDGIHITNTQNIQIMNSIIQTGDDCISIVDGAKNVQATDITCGPGHGISI GSLGADKSEDHVSDVKVDRAKFIGSTNGVRIKTWQGGLGSATNIIFQNILMDNVTNPIIINQNYCDQDSPCKHQGSAVQISNVVYKNIKGTSASKVAINF DCSKKYPCKGILLQDIHLVGEKDKKVNATCNNVR |
Full Sequence |
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Protein Sequence Length: 469 Download |
MCSGSYTDIH SYSSEENTLN SYLDEASTYD NNHVYPTFFG YIDDLDSEFA SKVSSLIEYK 60 LPKKSDSEEL DQVGCPEPSP SPSPVVVNVE DYGAKGDGIT NDTEAFDEAW NEACASEGPV 120 LFVIPENKTY LLTPIRFTGP CRSDDLTVQI AGTIEASDNR SDYQNSRGRW LLFENIENLI 180 VEGDGTIDGK GEIWWKNSCK INKTLPCKSA PTALTFYKCT NLRVRNIRIK NAQQMHLIFQ 240 KCVNVQAMNL MVTAPGKSPN TDGIHITNTQ NIQIMNSIIQ TGDDCISIVD GAKNVQATDI 300 TCGPGHGISI GSLGADKSED HVSDVKVDRA KFIGSTNGVR IKTWQGGLGS ATNIIFQNIL 360 MDNVTNPIII NQNYCDQDSP CKHQGSAVQI SNVVYKNIKG TSASKVAINF DCSKKYPCKG 420 ILLQDIHLVG EKDKKVNATC NNVRWTKRGI VIPSCQDEKL VIDTALIA* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-94 | 88 | 443 | 358 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-108 | 88 | 453 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-121 | 114 | 443 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-147 | 89 | 454 | 367 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-154 | 88 | 455 | 370 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI24904.1 | 0 | 1 | 455 | 1 | 455 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274775.1 | 0 | 15 | 455 | 12 | 448 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313308.1 | 0 | 79 | 455 | 1 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 79 | 455 | 72 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529616.1 | 0 | 15 | 455 | 37 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 181 | 415 | 113 | 350 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-18 | 163 | 401 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-18 | 163 | 401 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-18 | 163 | 401 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-18 | 163 | 401 | 55 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL511812 | 215 | 186 | 400 | 0 |
EE093402 | 256 | 163 | 418 | 0 |
EE091344 | 248 | 186 | 432 | 0 |
EY506367 | 354 | 22 | 373 | 0 |
EH769878 | 255 | 121 | 375 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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