| Basic Information | |
|---|---|
| Species | Aquilegia coerulea |
| Cazyme ID | Aquca_014_00836.1 |
| Family | GH28 |
| Protein Properties | Length: 469 Molecular Weight: 51736.5 Isoelectric Point: 6.4981 |
| Chromosome | Chromosome/Scaffold: 14 Start: 5068228 End: 5070669 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 63 | 394 | 0 |
| IDVCSASGGGHVIFPAGKTYLTATIYLKSGVILDIEKGARILGGTKLRDYPVVSKRWYVILAENVTDVGISGGGVIDGQGLKFVNKFDVKKNVMVSWNSS GACYGDECRPRLVGFLSCRNVRVWNVNLTQPAYWCLHIVRCDNTSIDNVSIYGDFDTPNNDGIDIEDSNNTVITRCIIDTGDDAICPKTYTAPLYNLTAK DCWIRTKSSAIKLGSASWFDFKGLVFDNITIVDSHRGLALQIRDGGNVSDITFSNINISTRYYDSSWWGRAEPIYVTNCPRDQSTNAGFISNLLFTNITA DSENGVFLSGCKGGLLSNLKFINVNLMYRRRT | |||
| Full Sequence |
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| Protein Sequence Length: 469 Download |
| MATLFIQLSL FLFTSIQLQL TTSQSISTNI ELPGSLTTSF SVIDYGAIGD GINYDTQYIQ 60 SAIDVCSASG GGHVIFPAGK TYLTATIYLK SGVILDIEKG ARILGGTKLR DYPVVSKRWY 120 VILAENVTDV GISGGGVIDG QGLKFVNKFD VKKNVMVSWN SSGACYGDEC RPRLVGFLSC 180 RNVRVWNVNL TQPAYWCLHI VRCDNTSIDN VSIYGDFDTP NNDGIDIEDS NNTVITRCII 240 DTGDDAICPK TYTAPLYNLT AKDCWIRTKS SAIKLGSASW FDFKGLVFDN ITIVDSHRGL 300 ALQIRDGGNV SDITFSNINI STRYYDSSWW GRAEPIYVTN CPRDQSTNAG FISNLLFTNI 360 TADSENGVFL SGCKGGLLSN LKFINVNLMY RRRTNYTGGM VDYRPGCQGL VNHSTAGIIM 420 EHIEGFEAEN VNMRWHSNHL RGWNNPLDFN PSTVNNISLL RFHSGLYQ* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-11 | 160 | 390 | 243 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-13 | 38 | 382 | 370 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 8.0e-15 | 3 | 264 | 265 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 8.0e-16 | 25 | 113 | 89 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| COG5434 | PGU1 | 3.0e-26 | 171 | 318 | 158 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 28 | 467 | 24 | 471 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 28 | 467 | 24 | 471 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 2 | 465 | 3 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 2 | 465 | 3 | 460 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 28 | 468 | 1 | 443 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-25 | 17 | 382 | 5 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-25 | 17 | 382 | 5 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-25 | 17 | 382 | 5 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-25 | 17 | 382 | 5 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.000000000002 | 41 | 317 | 158 | 484 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
