y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_017_00128.1 |
Family | GH28 |
Protein Properties | Length: 452 Molecular Weight: 47517.8 Isoelectric Point: 5.7995 |
Chromosome | Chromosome/Scaffold: 17 Start: 838222 End: 840297 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 408 | 0 |
ACSYAAGQSTFLVPKGDFLVGPVTFKGPCQKTPKVEIKGTLKAPTDLKAFNDLPTWLEFKDLSDLNITGCGTGVIDGQGESSYTHTGCQNSGGKCKNFPI NLRLTKVECGSVSELTLLNSKGFHMNLCFSNNINIHDMTITAPGNSPNTDGIHLSDSTHIDISSSKIAVGDDCISIGQGSSDIFVEKIHCGPGHGISIGS LGKYPNERDVQGVHVKNCTIEGTDNGVRVKTWPGSPPSKAFNFTFEDIIVNNVKNPIIIDQEYCPGHKCDSKGPSQVKISDIVFKKIRGTGSTNSPVKLV CSSAGCQNVVLNDINIKHVSDSPISSTCTNVKG |
Full Sequence |
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Protein Sequence Length: 452 Download |
MALSQSYVLI CLTGSLIFLW SFPSLDATRI PVSANAPAPS QSPGVSCGVF DVTKYGAVSD 60 GKTESCKAFE AAWADACSYA AGQSTFLVPK GDFLVGPVTF KGPCQKTPKV EIKGTLKAPT 120 DLKAFNDLPT WLEFKDLSDL NITGCGTGVI DGQGESSYTH TGCQNSGGKC KNFPINLRLT 180 KVECGSVSEL TLLNSKGFHM NLCFSNNINI HDMTITAPGN SPNTDGIHLS DSTHIDISSS 240 KIAVGDDCIS IGQGSSDIFV EKIHCGPGHG ISIGSLGKYP NERDVQGVHV KNCTIEGTDN 300 GVRVKTWPGS PPSKAFNFTF EDIIVNNVKN PIIIDQEYCP GHKCDSKGPS QVKISDIVFK 360 KIRGTGSTNS PVKLVCSSAG CQNVVLNDIN IKHVSDSPIS STCTNVKGLN VIAMLSPKPC 420 SSAEATAPAG PVSEEAPVTE EAPESEDPPI V* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-71 | 8 | 426 | 423 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 6.0e-72 | 49 | 420 | 375 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-74 | 52 | 405 | 356 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-85 | 84 | 407 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-115 | 32 | 420 | 392 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 35 | 399 | 480 | 841 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 49 | 407 | 55 | 414 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 33 | 399 | 16 | 383 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36886.1 | 0 | 49 | 421 | 44 | 415 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270999.1 | 0 | 35 | 399 | 61 | 422 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 6e-18 | 138 | 406 | 72 | 333 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1ib4_A | 6e-18 | 138 | 406 | 72 | 333 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1ia5_A | 6e-18 | 138 | 406 | 72 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 2e-17 | 138 | 406 | 68 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-17 | 138 | 406 | 68 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |