Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_017_00128.2 |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 41954.4 Isoelectric Point: 5.797 |
Chromosome | Chromosome/Scaffold: 17 Start: 838222 End: 840297 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 20 | 352 | 0 |
ACSYAAGQSTFLVPKGDFLVGPVTFKGPCQKTPKVEIKGTLKAPTDLKAFNDLPTWLEFKDLSDLNITGCGTGVIDGQGESSYTHTGCQNSGGKCKNFPI NLRLTKVECGSVSELTLLNSKGFHMNLCFSNNINIHDMTITAPGNSPNTDGIHLSDSTHIDISSSKIAVGDDCISIGQGSSDIFVEKIHCGPGHGISIGS LGKYPNERDVQGVHVKNCTIEGTDNGVRVKTWPGSPPSKAFNFTFEDIIVNNVKNPIIIDQEYCPGHKCDSKGPSQVKISDIVFKKIRGTGSTNSPVKLV CSSAGCQNVVLNDINIKHVSDSPISSTCTNVKG |
Full Sequence |
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Protein Sequence Length: 396 Download |
MELFQMERPR AAFEAAWADA CSYAAGQSTF LVPKGDFLVG PVTFKGPCQK TPKVEIKGTL 60 KAPTDLKAFN DLPTWLEFKD LSDLNITGCG TGVIDGQGES SYTHTGCQNS GGKCKNFPIN 120 LRLTKVECGS VSELTLLNSK GFHMNLCFSN NINIHDMTIT APGNSPNTDG IHLSDSTHID 180 ISSSKIAVGD DCISIGQGSS DIFVEKIHCG PGHGISIGSL GKYPNERDVQ GVHVKNCTIE 240 GTDNGVRVKT WPGSPPSKAF NFTFEDIIVN NVKNPIIIDQ EYCPGHKCDS KGPSQVKISD 300 IVFKKIRGTG STNSPVKLVC SSAGCQNVVL NDINIKHVSD SPISSTCTNV KGLNVIAMLS 360 PKPCSSAEAT APAGPVSEEA PVTEEAPESE DPPIV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-68 | 12 | 370 | 363 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 7.0e-68 | 11 | 364 | 357 | + polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-70 | 12 | 349 | 340 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-87 | 28 | 351 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-109 | 10 | 364 | 358 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ63000.1 | 0 | 11 | 366 | 79 | 433 | oil palm polygalacturonase allergen PEST643 [Elaeis guineensis] |
EMBL | CAN69218.1 | 0 | 12 | 343 | 508 | 841 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 12 | 351 | 74 | 414 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 12 | 343 | 50 | 383 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270999.1 | 0 | 12 | 343 | 89 | 422 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 3e-18 | 82 | 350 | 72 | 333 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 1ib4_A | 3e-18 | 82 | 350 | 72 | 333 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 1ia5_A | 3e-18 | 82 | 350 | 72 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 1e-17 | 82 | 350 | 68 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-17 | 82 | 350 | 68 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR930531 | 289 | 12 | 300 | 0 |
DT735870 | 268 | 129 | 396 | 0 |
DR932296 | 258 | 50 | 307 | 0 |
DT756038 | 254 | 143 | 396 | 0 |
DT742897 | 250 | 147 | 396 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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