Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_017_00129.1 |
Family | GH28 |
Protein Properties | Length: 419 Molecular Weight: 44758.6 Isoelectric Point: 9.062 |
Chromosome | Chromosome/Scaffold: 17 Start: 842064 End: 843908 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 66 | 407 | 0 |
WDATCKHPEPARLVIPGGEFLVRQVKFEGPCNNKSPIFIQLRGIVKASIDTSTFTEPEWITFEKIVGLNLNGGGTFDGQGPAVWAKHDCSAQAKCASRSV NLKFRNVTNAKIGRITSKDPKGFHMCINSCNNFRAKALEITAPGDSPNTDGIHVSNSNDVTIAKSVISTGDDCISIIQGVNRIKIADVVCGPGHGISVGS LGKYKDEKDVHDVLVKNCTLINTQNGVRIKTWPDSPPSAATNITFTNIKMENVTNPIIIDQNYCASAKSCRGNKASNVKISQVKFINIRGTTPTQCAVKM HCSPSFPCQNVQVANIDLKYVPVLPTNALSKAVSECANVKVA |
Full Sequence |
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Protein Sequence Length: 419 Download |
MTTYNKVDIK IVLLLCLVSI SSLAEAFGRP AASAIVKPRQ TIFNVLAFGA KPDGKTDSTN 60 AFQAAWDATC KHPEPARLVI PGGEFLVRQV KFEGPCNNKS PIFIQLRGIV KASIDTSTFT 120 EPEWITFEKI VGLNLNGGGT FDGQGPAVWA KHDCSAQAKC ASRSVNLKFR NVTNAKIGRI 180 TSKDPKGFHM CINSCNNFRA KALEITAPGD SPNTDGIHVS NSNDVTIAKS VISTGDDCIS 240 IIQGVNRIKI ADVVCGPGHG ISVGSLGKYK DEKDVHDVLV KNCTLINTQN GVRIKTWPDS 300 PPSAATNITF TNIKMENVTN PIIIDQNYCA SAKSCRGNKA SNVKISQVKF INIRGTTPTQ 360 CAVKMHCSPS FPCQNVQVAN IDLKYVPVLP TNALSKAVSE CANVKVAVAG FVIPAPCI* 420 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03010 | PLN03010 | 9.0e-79 | 42 | 405 | 370 | + polygalacturonase |
PLN02155 | PLN02155 | 2.0e-86 | 42 | 418 | 378 | + polygalacturonase |
PLN02793 | PLN02793 | 3.0e-94 | 32 | 417 | 393 | + Probable polygalacturonase |
pfam00295 | Glyco_hydro_28 | 4.0e-97 | 70 | 406 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02188 | PLN02188 | 2.0e-130 | 31 | 417 | 389 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 38 | 410 | 51 | 419 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 42 | 385 | 489 | 835 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 38 | 417 | 51 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301489.1 | 0 | 1 | 410 | 1 | 405 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516967.1 | 0 | 38 | 417 | 47 | 411 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 0.000000000000002 | 213 | 356 | 165 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1bhe_A | 0.000000000000002 | 137 | 328 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000002 | 213 | 383 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000002 | 213 | 383 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000002 | 213 | 383 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |