y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_019_00042.1 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 42512.8 Isoelectric Point: 8.323 |
Chromosome | Chromosome/Scaffold: 19 Start: 807227 End: 808936 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 378 | 0 |
KEVCAWEGGSTVLVPKGTYFVGKPTEFIGPCKGFMKFLLEGVLKAPTSLSGFADTWIKFRYVDGLLVSGSGTLDGQGHSAWQPCDPKCKTLPANLRFDFV KNANVRQIHSVDSKNLHINIYACQNMNVSSITIVAPEDSVNTDGIHIGDSTFINIKHSKIGTGDDCISFSPGSKNIDVADVTCGPGHGISIGSLGGNPDE DSVMGLMIRNITFIGTTNGVRIKTWAPSESNIVQNITFQHISMNNVRNPIIIDQEYCPSRTCDNKSPSKVQIKDVHYRNILGTSASKVAVNFVCSRSHPC QNLELRNINLLYTGKDGPVSAKCSNAKG |
Full Sequence |
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Protein Sequence Length: 392 Download |
MVSSLTFPQK FWMVFLFAWV VKADKVFDVK VFGAVADNKV DCSKAFLDAW KEVCAWEGGS 60 TVLVPKGTYF VGKPTEFIGP CKGFMKFLLE GVLKAPTSLS GFADTWIKFR YVDGLLVSGS 120 GTLDGQGHSA WQPCDPKCKT LPANLRFDFV KNANVRQIHS VDSKNLHINI YACQNMNVSS 180 ITIVAPEDSV NTDGIHIGDS TFINIKHSKI GTGDDCISFS PGSKNIDVAD VTCGPGHGIS 240 IGSLGGNPDE DSVMGLMIRN ITFIGTTNGV RIKTWAPSES NIVQNITFQH ISMNNVRNPI 300 IIDQEYCPSR TCDNKSPSKV QIKDVHYRNI LGTSASKVAV NFVCSRSHPC QNLELRNINL 360 LYTGKDGPVS AKCSNAKGIS MGKLIPSSCL N* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 3.0e-84 | 3 | 391 | 394 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-85 | 33 | 391 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-91 | 33 | 386 | 363 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-100 | 54 | 377 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-126 | 33 | 389 | 365 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ63000.1 | 0 | 22 | 391 | 57 | 433 | oil palm polygalacturonase allergen PEST643 [Elaeis guineensis] |
Swiss-Prot | Q6H9K0 | 0 | 20 | 387 | 3 | 373 | PGLR2_PLAAC RecName: Full=Exopolygalacturonase; AltName: Full=Pollen allergen Pla a 2; AltName: Allergen=Pla a 2; Flags: Precursor |
RefSeq | XP_002273801.1 | 0 | 1 | 390 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002274125.1 | 0 | 21 | 389 | 22 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314146.1 | 0 | 5 | 390 | 1 | 392 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 3e-19 | 93 | 375 | 39 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-19 | 93 | 375 | 39 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-19 | 93 | 375 | 39 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-19 | 93 | 375 | 39 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 3e-19 | 93 | 375 | 39 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |