y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_019_00043.1 |
Family | GH28 |
Protein Properties | Length: 268 Molecular Weight: 29755.4 Isoelectric Point: 9.5925 |
Chromosome | Chromosome/Scaffold: 19 Start: 809951 End: 811101 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 38 | 256 | 0 |
DGLMVHWMAKELRHGLPMIAIIKIRQCKTLPANLRFHFVKNAKVGQIHSVDSKGLHINLFASEQMDLSSITIDAPEDSSNTDGIHTGNSTFINIQHSKIG TGDDCISFSHGSKNIYVADVTCGPGHGISIGSLGSIRNKDSVMGLIINDVLHFYQYTNGVRIKTWAASQLNLVRNITFLHLIMNNVRNPVFINQEYYCPY SSCDKKSFSRVQIKMFTTE |
Full Sequence |
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Protein Sequence Length: 268 Download |
MVLVPKGTYL VGGSTTFMGP WKCLSGFLNF WIAFRSVDGL MVHWMAKELR HGLPMIAIIK 60 IRQCKTLPAN LRFHFVKNAK VGQIHSVDSK GLHINLFASE QMDLSSITID APEDSSNTDG 120 IHTGNSTFIN IQHSKIGTGD DCISFSHGSK NIYVADVTCG PGHGISIGSL GSIRNKDSVM 180 GLIINDVLHF YQYTNGVRIK TWAASQLNLV RNITFLHLIM NNVRNPVFIN QEYYCPYSSC 240 DKKSFSRVQI KMFTTETSGV PPLRRLQ* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-27 | 64 | 235 | 173 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 9.0e-28 | 31 | 233 | 203 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-32 | 2 | 251 | 274 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-44 | 2 | 251 | 276 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-50 | 2 | 251 | 269 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABG38467.1 | 0 | 2 | 250 | 55 | 320 | pollen-expressed protein MF6t [Brassica juncea] |
GenBank | ACP74159.1 | 0 | 2 | 250 | 55 | 320 | putative polygalacturonase [Brassica rapa subsp. campestris] |
RefSeq | XP_002273801.1 | 0 | 1 | 251 | 64 | 329 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002274096.1 | 0 | 2 | 254 | 62 | 330 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314146.1 | 0 | 1 | 254 | 61 | 328 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.0000000000002 | 55 | 260 | 137 | 340 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.00000000004 | 65 | 239 | 101 | 275 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.00000000004 | 65 | 239 | 101 | 275 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.00000000004 | 65 | 239 | 101 | 275 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000002 | 65 | 233 | 97 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GW611463 | 187 | 64 | 250 | 9.99967e-42 |
GR459904 | 236 | 29 | 250 | 4.00001e-41 |
GR457589 | 236 | 29 | 250 | 4.99997e-41 |
GR455947 | 235 | 30 | 250 | 9.99995e-41 |
EE569531 | 235 | 30 | 250 | 4.00001e-40 |
Sequence Alignments (This image is cropped. Click for full image.) |
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